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    weak chloroplast movement under blue light protein (DUF827) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831536, updated on 18-Sep-2024

    Summary

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    Official Full Name
    weak chloroplast movement under blue light protein (DUF827)
    Primary source
    TAIR:AT5G16730
    Locus tag
    AT5G16730
    See related
    Araport:AT5G16730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5E19.70; F5E19_70
    Summary
    Encodes a microtubule-associated protein.
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (5497524..5500985)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene protein EMBRYO DEFECTIVE 2247 Neighboring gene caldesmon-like protein (Protein of unknown function, DUF593) Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene Transducin family protein / WD-40 repeat family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtMAC stabilizes the phragmoplast by crosslinking microtubules and actin filaments during cytokinesis. Du P, et al. J Integr Plant Biol, 2023 Aug. PMID 37093857
    2. A novel upstream regulator of WRKY53 transcription during leaf senescence in Arabidopsis thaliana. Miao Y, et al. Plant Biol (Stuttg), 2008 Sep. PMID 18721316
    3. Purification and characterization of novel microtubule-associated proteins from Arabidopsis cell suspension cultures. Hamada T, et al. Plant Physiol, 2013 Dec. PMID 24134884, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The AT5G16730 protein binds to the WRKY53 promoter and influences the expression of WRKY53.
      Title: A novel upstream regulator of WRKY53 transcription during leaf senescence in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    NM_121679.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in phragmoplast microtubule organization IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of microtubule associated complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    is_active_in phragmoplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    weak chloroplast movement under blue light protein (DUF827)
    NP_197175.1
    • LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545), Spectrin/alpha-actinin (InterPro:IPR018159); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT3G02930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5497524..5500985
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121679.4 → NP_197175.1  weak chloroplast movement under blue light protein (DUF827) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197175.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56Y73, Q9LFE4
      UniProtKB/TrEMBL
      A0A178UKQ2, A0A5S9Y4R5
      Conserved Domains (1) summary
      COG1196
      Location:114 → 447
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LFE4.1

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