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    Spc97 / Spc98 family of spindle pole body (SBP) component [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831607, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Spc97 / Spc98 family of spindle pole body (SBP) component
    Primary source
    TAIR:AT5G17410
    Locus tag
    AT5G17410
    See related
    Araport:AT5G17410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T10B6.70; T10B6_70
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    21
    Sequence:
    Chromosome: 5; NC_003076.8 (5730569..5736695)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Adenine nucleotide alpha hydrolases-like superfamily protein Neighboring gene endoplasmic reticulum-adenine nucleotide transporter 1 Neighboring gene ncRNA Neighboring gene Cellulose synthase family protein Neighboring gene ncRNA Neighboring gene Integrase-type DNA-binding superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Microtubule and katanin-dependent dynamics of microtubule nucleation complexes in the acentrosomal Arabidopsis cortical array. Nakamura M, et al. Nat Cell Biol, 2010 Nov. PMID 20935636
    2. A mutation in the Arabidopsis gamma-tubulin-containing complex causes helical growth and abnormal microtubule branching. Nakamura M, et al. J Cell Sci, 2009 Jul 1. PMID 19509058
    3. Arabidopsis GCP2 and GCP3 are part of a soluble gamma-tubulin complex and have nuclear envelope targeting domains. Seltzer V, et al. Plant J, 2007 Oct. PMID 17714428
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_121747.4
    NM_180507.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables gamma-tubulin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gametophyte development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in gamma-tubulin complex localization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in microtubule nucleation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in positive regulation of microtubule nucleation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell cortex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cortical microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of gamma-tubulin complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nuclear envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in spindle pole IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Spc97 / Spc98 family of spindle pole body (SBP) component
    NP_568346.1
    • Spc97 / Spc98 family of spindle pole body (SBP) component; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: spindle pole body component 98 (TAIR:AT5G06680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_850838.1
    • Spc97 / Spc98 family of spindle pole body (SBP) component; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: spindle pole body component 98 (TAIR:AT5G06680.1); Has 1351 Blast hits to 1243 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 645; Fungi - 324; Plants - 181; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5730569..5736695
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121747.4 → NP_568346.1  Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568346.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4KGZ8, Q9C5H9, Q9LF43
      UniProtKB/TrEMBL
      A0A178UTQ0, A0A654G204
      Conserved Domains (2) summary
      pfam04130
      Location:362 → 669
      Spc97_Spc98; Spc97 / Spc98 family
      pfam17681
      Location:68 → 359
      GCP_N_terminal; Gamma tubulin complex component N-terminal

    2. NM_180507.2 → NP_850838.1  Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850838.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y5S1, A0A654G204
      Conserved Domains (2) summary
      pfam04130
      Location:363 → 670
      Spc97_Spc98; Spc97 / Spc98 family
      pfam17681
      Location:69 → 360
      GCP_N_terminal; Gamma tubulin complex component N-terminal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C5H9.1

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