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    TBL16 TRICHOME BIREFRINGENCE-LIKE 16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832191, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TBL16
    Official Full Name
    TRICHOME BIREFRINGENCE-LIKE 16
    Primary source
    TAIR:AT5G20680
    Locus tag
    AT5G20680
    See related
    Araport:AT5G20680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1M15.80; T1M15_80; TRICHOME BIREFRINGENCE-LIKE 16
    Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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    Genomic context

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    See TBL16 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (6997990..7002033)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Zn-dependent exopeptidases superfamily protein Neighboring gene DUF1677 family protein (DUF1677) Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene senescence-associated family protein, putative (DUF581)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Acetylation of homogalacturonan and rhamnogalacturonan-I is catalyzed by a suite of trichome birefringence-like proteins. Zhong R, et al. Plant J, 2024 Feb. PMID 37934816
    2. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
    3. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001085140.2
    NM_001161256.2
    NM_001343680.1
    NM_001343681.1
    NM_001343682.1
    NM_122075.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-acyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in Golgi trans cisterna HDA PubMed 
    located_in endosome HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in trans-Golgi network HDA PubMed 

    General protein information

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    Preferred Names
    TRICHOME BIREFRINGENCE-LIKE 16
    NP_001078609.1
    • TRICHOME BIREFRINGENCE-LIKE 16; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 14 (TAIR:AT5G64020.1); Has 1630 Blast hits to 1562 proteins in 94 species: Archae - 0; Bacteria - 11; Metazoa - 58; Fungi - 29; Plants - 1334; Viruses - 7; Other Eukaryotes - 191 (source: NCBI BLink).
    NP_001154728.1
    • TRICHOME BIREFRINGENCE-LIKE 16; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 14 (TAIR:AT5G64020.1); Has 1636 Blast hits to 1561 proteins in 93 species: Archae - 0; Bacteria - 11; Metazoa - 58; Fungi - 27; Plants - 1333; Viruses - 7; Other Eukaryotes - 200 (source: NCBI BLink).
    NP_568398.1
    • TRICHOME BIREFRINGENCE-LIKE 16 (TBL16); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 14 (TAIR:AT5G64020.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6997990..7002033
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001161256.2 → NP_001154728.1  TRICHOME BIREFRINGENCE-LIKE 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154728.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQ97, B9DFA9, F4K5L5, Q93ZW1
      UniProtKB/TrEMBL
      A0A178UN54, A0A7G2FA56, A0AAF0Y2E0
      Conserved Domains (2) summary
      pfam13839
      Location:268 → 550
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:210 → 264
      PMR5N; PMR5 N terminal Domain

    2. NM_001085140.2 → NP_001078609.1  TRICHOME BIREFRINGENCE-LIKE 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078609.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G2V4, A0A7G2FC20
      Conserved Domains (2) summary
      pfam13839
      Location:250 → 532
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:192 → 246
      PMR5N; PMR5 N terminal Domain

    3. NM_001343680.1 → NP_001332053.1  TRICHOME BIREFRINGENCE-LIKE 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQ97, B9DFA9, F4K5L5, Q93ZW1
      UniProtKB/TrEMBL
      A0A178UN54, A0A7G2FA56, A0AAF0Y2E0
      Conserved Domains (2) summary
      pfam13839
      Location:268 → 550
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:210 → 264
      PMR5N; PMR5 N terminal Domain

    4. NM_001343681.1 → NP_001332054.1  TRICHOME BIREFRINGENCE-LIKE 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQ97, B9DFA9, F4K5L5, Q93ZW1
      UniProtKB/TrEMBL
      A0A178UN54, A0A7G2FA56, A0AAF0Y2E0
      Conserved Domains (2) summary
      pfam13839
      Location:268 → 550
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:210 → 264
      PMR5N; PMR5 N terminal Domain

    5. NM_122075.2 → NP_568398.1  TRICHOME BIREFRINGENCE-LIKE 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568398.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQ97, B9DFA9, F4K5L5, Q93ZW1
      UniProtKB/TrEMBL
      A0A178UN54, A0A7G2FA56, A0AAF0Y2E0
      Conserved Domains (2) summary
      pfam13839
      Location:268 → 550
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:210 → 264
      PMR5N; PMR5 N terminal Domain

    6. NM_001343682.1 → NP_001332055.1  TRICHOME BIREFRINGENCE-LIKE 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFS1, A0A7G2FC20
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4K5L5.1

    Gene LinkOut

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