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    Tsga13 testis specific gene A13 [ Mus musculus (house mouse) ]

    Gene ID: 116732, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tsga13provided by MGI
    Official Full Name
    testis specific gene A13provided by MGI
    Primary source
    MGI:MGI:1891413
    See related
    Ensembl:ENSMUSG00000039032 AllianceGenome:MGI:1891413
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Vme1; 1700023D02Rik
    Summary
    Orthologous to human TSGA13 (testis specific 13). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in testis adult (RPKM 2.8), genital fat pad adult (RPKM 0.2) and 1 other tissue See more
    Orthologs
    human all
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    Genomic context

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    See Tsga13 in Genome Data Viewer
    Location:
    6 A3.3; 6 12.54 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (30873915..30902089, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (30896981..30921570, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene mesoderm specific transcript Neighboring gene coatomer protein complex, subunit gamma 2 Neighboring gene coatomer protein complex, subunit gamma 2, opposite strand 2 Neighboring gene RIKEN cDNA 4930412F09 gene Neighboring gene predicted gene, 38781 Neighboring gene STARR-seq mESC enhancer starr_15475 Neighboring gene Kruppel-like transcription factor 14 Neighboring gene predicted gene, 40359

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A novel epigenetic control operating on Vme1+ locus leads to variegated monoallelic expression. Jeong S, et al. Biochem Biophys Res Commun, 2000 Dec 29. PMID 11162444
    2. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
    3. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    4. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (2)  1 citation

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    testis-specific gene 13 protein
    Names
    variegated monoallelic expression 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_054073.2 → NP_473414.1  testis-specific gene 13 protein

      See identical proteins and their annotated locations for NP_473414.1

      Status: PROVISIONAL

      Source sequence(s)
      AK006265
      Consensus CDS
      CCDS19980.1
      UniProtKB/Swiss-Prot
      Q9DA17
      Related
      ENSMUSP00000040894.2, ENSMUST00000048580.2
      Conserved Domains (1) summary
      pfam14994
      Location:1 → 272
      TSGA13; Testis-specific gene 13 protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      30873915..30902089 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036165759.1 → XP_036021652.1  testis-specific gene 13 protein isoform X3

      Conserved Domains (1) summary
      pfam14994
      Location:1 → 237
      TSGA13; Testis-specific gene 13 protein

    2. XM_036165755.1 → XP_036021648.1  testis-specific gene 13 protein isoform X1

      Conserved Domains (1) summary
      pfam14994
      Location:3 → 273
      TSGA13; Testis-specific gene 13 protein

    3. XM_036165756.1 → XP_036021649.1  testis-specific gene 13 protein isoform X2

      UniProtKB/Swiss-Prot
      Q9DA17
      Conserved Domains (1) summary
      pfam14994
      Location:1 → 272
      TSGA13; Testis-specific gene 13 protein

    4. XM_036165757.1 → XP_036021650.1  testis-specific gene 13 protein isoform X3

      Conserved Domains (1) summary
      pfam14994
      Location:1 → 237
      TSGA13; Testis-specific gene 13 protein

    5. XM_036165758.1 → XP_036021651.1  testis-specific gene 13 protein isoform X3

      Conserved Domains (1) summary
      pfam14994
      Location:1 → 237
      TSGA13; Testis-specific gene 13 protein

    6. XM_017321349.3 → XP_017176838.1  testis-specific gene 13 protein isoform X4

      Conserved Domains (1) summary
      pfam14994
      Location:3 → 177
      TSGA13; Testis-specific gene 13 protein
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9DA17.1 GenPept UniProtKB/Swiss-Prot:Q9DA17

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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