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    LFR ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821873, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LFR
    Official Full Name
    ARM repeat superfamily protein
    Primary source
    TAIR:AT3G22990
    Locus tag
    AT3G22990
    See related
    Araport:AT3G22990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LEAF AND FLOWER RELATED
    Summary
    Armadillo-repeat containing protein. Involved in leaf and flower development. Located in nucleus. Broadly expressed throughout vegetative and floral tissues.
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    Genomic context

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    See LFR in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (8163941..8166350)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Ribosomal protein S5/Elongation factor G/III/V family protein Neighboring gene CBL-interacting protein kinase 7 Neighboring gene receptor like protein 36

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis LFR gene is required for the formation of anther cell layers and normal expression of key regulatory genes. Wang XT, et al. Mol Plant, 2012 Sep. PMID 22461668
    2. LFR is functionally associated with AS2 to mediate leaf development in Arabidopsis. Lin X, et al. Plant J, 2018 May 18. PMID 29775508
    3. LFR, which encodes a novel nuclear-localized Armadillo-repeat protein, affects multiple developmental processes in the aerial organs in Arabidopsis. Wang Z, et al. Plant Mol Biol, 2009 Jan. PMID 18846319
    4. Arabidopsis LFR, a SWI/SNF complex component, interacts with ICE1 and activates ICE1 and CBF3 expression in cold acclimation. Ma T, et al. Front Plant Sci, 2023. PMID 37025149, Free PMC Article
    5. Telomerase Interaction Partners-Insight from Plants. Fulnečková J, et al. Int J Mol Sci, 2021 Dec 29. PMID 35008793, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LFR gene is required for the formation of anther cell layers and normal expression of key regulatory genes.
      Title: The Arabidopsis LFR gene is required for the formation of anther cell layers and normal expression of key regulatory genes.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_113199.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anther development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within flower development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of brahma complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ARM repeat superfamily protein
    NP_566721.1
    • LEAF AND FLOWER RELATED (LFR); FUNCTIONS IN: binding; INVOLVED IN: flower development, leaf development; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 69 Blast hits to 69 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 2; Plants - 25; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8163941..8166350
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113199.5 → NP_566721.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566721.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFF7, Q9LS90
      UniProtKB/TrEMBL
      A0A178V975, A0A5S9XET7, A0A654FB42
      Conserved Domains (1) summary
      pfam12031
      Location:212 → 235
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LS90.1

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