U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    AMSH2 associated molecule with the SH3 domain of STAM 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837603, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    AMSH2
    Official Full Name
    associated molecule with the SH3 domain of STAM 2
    Primary source
    TAIR:AT1G10600
    Locus tag
    AT1G10600
    See related
    Araport:AT1G10600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    associated molecule with the SH3 domain of STAM 2; F20B24.2
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See AMSH2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (3503640..3506159)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Gibberellin-regulated family protein Neighboring gene Nucleic acid-binding, OB-fold-like protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene ADP-ribosylation factor A1F Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001035943.2
    NM_001084036.1
    NM_100936.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables K63-linked deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal-dependent deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein K48-linked deubiquitination ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in protein K63-linked deubiquitination ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    associated molecule with the SH3 domain of STAM 2
    NP_001031020.1
    • associated molecule with the SH3 domain of STAM 2 (AMSH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: associated molecule with the SH3 domain of STAM 3 (TAIR:AT4G16144.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001077505.1
    • associated molecule with the SH3 domain of STAM 2 (AMSH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: associated molecule with the SH3 domain of STAM 3 (TAIR:AT4G16144.1); Has 1117 Blast hits to 1115 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 409; Fungi - 306; Plants - 280; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
    NP_172530.2
    • associated molecule with the SH3 domain of STAM 2 (AMSH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: associated molecule with the SH3 domain of STAM 3 (TAIR:AT4G16144.1); Has 1093 Blast hits to 1091 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 401; Fungi - 313; Plants - 274; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3503640..3506159
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331916.1 → NP_001323286.1  associated molecule with the SH3 domain of STAM 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQQ2, Q2V4P1, Q6NKP9, Q9SGZ1, Q9XII9
      UniProtKB/TrEMBL
      A0A178W3T5, A0A5S9TNH9
      Conserved Domains (1) summary
      cd08066
      Location:46 → 223
      MPN_AMSH_like; Mov34/MPN/PAD-1 family

    2. NM_001035943.2 → NP_001031020.1  associated molecule with the SH3 domain of STAM 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031020.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NKP9
      Conserved Domains (1) summary
      cl13996
      Location:45 → 166
      MPN; Mpr1p, Pad1p N-terminal (MPN) domains

    3. NM_100936.3 → NP_172530.2  associated molecule with the SH3 domain of STAM 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172530.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQQ2, Q2V4P1, Q6NKP9, Q9SGZ1, Q9XII9
      UniProtKB/TrEMBL
      A0A178W3T5, A0A5S9TNH9
      Conserved Domains (1) summary
      cd08066
      Location:46 → 223
      MPN_AMSH_like; Mov34/MPN/PAD-1 family

    4. NM_001084036.1 → NP_001077505.1  associated molecule with the SH3 domain of STAM 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077505.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NKP9
      Conserved Domains (1) summary
      cd08066
      Location:46 → 222
      MPN_AMSH_like; Mov34/MPN/PAD-1 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NKP9.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools