U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PUX2 plant UBX domain-containing protein 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814694, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PUX2
    Official Full Name
    plant UBX domain-containing protein 2
    Primary source
    TAIR:AT2G01650
    Locus tag
    AT2G01650
    See related
    Araport:AT2G01650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    plant UBX domain-containing protein 2; T8O11.18; T8O11_18
    Summary
    encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PUX2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (284509..286529, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RNI-like superfamily protein Neighboring gene O-Glycosyl hydrolases family 17 protein Neighboring gene ncRNA Neighboring gene ribosome biogenesis protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene plasmodesmata-located protein 6

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Chandran D, et al. Mol Plant Microbe Interact, 2013 May. PMID 23301616
    2. Temporal global expression data reveal known and novel salicylate-impacted processes and regulators mediating powdery mildew growth and reproduction on Arabidopsis. Chandran D, et al. Plant Physiol, 2009 Mar. PMID 19176722, Free PMC Article
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001335070.1
    NM_001335071.1
    NM_126226.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to fungus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extrinsic component of membrane NAS
    Non-traceable Author Statement
    more info
    		  
    located_in mitochondrion HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    plant UBX domain-containing protein 2
    NP_001318177.1
    • plant UBX domain-containing protein 2 (PUX2); CONTAINS InterPro DOMAIN/s: PUB domain (InterPro:IPR018997), UBX (InterPro:IPR001012), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT1G04850.1); Has 563 Blast hits to 563 proteins in 115 species: Archae - 0; Bacteria - 15; Metazoa - 269; Fungi - 22; Plants - 176; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      284509..286529 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335070.1 → NP_001318177.1  plant UBX domain-containing protein 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LGE5, Q9ZU93
      UniProtKB/TrEMBL
      A0A178VRF3, A0A5S9WWD5, A0A7G2E4Q6
      Conserved Domains (2) summary
      cd09212
      Location:175 → 264
      PUB; PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins
      cd16119
      Location:354 → 434
      UBX_UBXN6; Ubiquitin regulatory domain X (UBX) found in UBX domain protein 6 (UBXN6) and similar proteins

    2. NM_126226.4 → NP_565271.1  plant UBX domain-containing protein 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565271.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LGE5, Q9ZU93
      UniProtKB/TrEMBL
      A0A178VRF3, A0A5S9WWD5, A0A7G2E4Q6
      Conserved Domains (2) summary
      cd09212
      Location:175 → 264
      PUB; PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins
      cd16119
      Location:354 → 434
      UBX_UBXN6; Ubiquitin regulatory domain X (UBX) found in UBX domain protein 6 (UBXN6) and similar proteins

    3. NM_001335071.1 → NP_001323562.1  plant UBX domain-containing protein 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VRF3, A0A1P8AXE7, A0A5S9WWD5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZU93.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.