U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CFAP92 cilia and flagella associated protein 92 (putative) [ Homo sapiens (human) ]

    Gene ID: 57501, updated on 27-Nov-2024

    Summary

    Official Symbol
    CFAP92provided by HGNC
    Official Full Name
    cilia and flagella associated protein 92 (putative)provided by HGNC
    Primary source
    HGNC:HGNC:29231
    See related
    Ensembl:ENSG00000114656 AllianceGenome:HGNC:29231
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FAP92; KIAA1257
    Expression
    Broad expression in testis (RPKM 2.9), skin (RPKM 2.2) and 24 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See CFAP92 in Genome Data Viewer
    Location:
    3q21.3
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (128909873..129026748, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (131654595..131771396, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (128628716..128722845, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128583050-128583876 Neighboring gene IFT122 pseudogene 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr3:128597333-128598184 and GRCh37_chr3:128598185-128599037 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128599038-128599889 Neighboring gene ACAD9 divergent transcript Neighboring gene acyl-CoA dehydrogenase family member 9 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:128620937-128622136 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:128651057-128651558 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128653559-128654060 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128654061-128654560 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:128682980-128683974 Neighboring gene MPRA-validated peak4825 silencer Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:128705779-128706978 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128711587-128712348 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14714 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128734769-128735276 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128735847-128736348 Neighboring gene EF-hand and coiled-coil domain containing 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14716 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128752375-128752929 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128756987-128757962 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128757963-128758936 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20502 Neighboring gene JMJD4 pseudogene 1 Neighboring gene glycoprotein IX platelet

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    uncharacterized protein CFAP92
    Names
    putative cilia and flagella associated protein 92

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001348520.2NP_001335449.1  uncharacterized protein CFAP92 isoform a

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (a).
      Source sequence(s)
      AC112484
    2. NM_001348521.2NP_001335450.1  uncharacterized protein CFAP92 isoform b

      Status: VALIDATED

      Source sequence(s)
      AC112484
    3. NM_001348522.2NP_001335451.1  uncharacterized protein CFAP92 isoform d

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4), as well as variant 5, encodes isoform d.
      Source sequence(s)
      AC112484
      Consensus CDS
      CCDS87133.1
      UniProtKB/Swiss-Prot
      Q9ULG3
      Conserved Domains (1) summary
      pfam15084
      Location:396
      DUF4550; Domain of unknown function (DUF4550)
    4. NM_001348523.2NP_001335452.1  uncharacterized protein CFAP92 isoform d

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5), as well as variant 4, encodes isoform d.
      Source sequence(s)
      AC112484, BC031632
      Consensus CDS
      CCDS87133.1
      UniProtKB/Swiss-Prot
      Q9ULG3
      Related
      ENSP00000422539.1, ENST00000515659.1
      Conserved Domains (1) summary
      pfam15084
      Location:396
      DUF4550; Domain of unknown function (DUF4550)
    5. NM_001394090.1NP_001381019.1  uncharacterized protein CFAP92 isoform e

      Status: VALIDATED

      Source sequence(s)
      AC112484
      Consensus CDS
      CCDS93370.1
      UniProtKB/TrEMBL
      A0A2R8YFM9
      Related
      ENSP00000496592.2, ENST00000645291.3
    6. NM_020741.3NP_065792.1  uncharacterized protein CFAP92 isoform c

      See identical proteins and their annotated locations for NP_065792.1

      Status: VALIDATED

      Source sequence(s)
      AC112484, BC038736
      Consensus CDS
      CCDS46905.1
      UniProtKB/Swiss-Prot
      Q8IXY7, Q8N5T4, Q9ULG3
      UniProtKB/TrEMBL
      D6RH05
      Related
      ENSP00000265068.5, ENST00000265068.9
      Conserved Domains (1) summary
      pfam15084
      Location:115208
      DUF4550; Domain of unknown function (DUF4550)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      128909873..129026748 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017006945.2XP_016862434.1  uncharacterized protein CFAP92 isoform X3

    2. XM_011513050.3XP_011511352.2  uncharacterized protein CFAP92 isoform X2

    3. XM_047448638.1XP_047304594.1  uncharacterized protein CFAP92 isoform X4

    4. XM_047448639.1XP_047304595.1  uncharacterized protein CFAP92 isoform X5

    5. XM_047448637.1XP_047304593.1  uncharacterized protein CFAP92 isoform X1

    6. XM_047448640.1XP_047304596.1  uncharacterized protein CFAP92 isoform X6

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      131654595..131771396 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054347391.1XP_054203366.1  uncharacterized protein CFAP92 isoform X3

    2. XM_054347390.1XP_054203365.1  uncharacterized protein CFAP92 isoform X2

    3. XM_054347392.1XP_054203367.1  uncharacterized protein CFAP92 isoform X4

    4. XM_054347389.1XP_054203364.1  uncharacterized protein CFAP92 isoform X1

    5. XM_054347393.1XP_054203368.1  uncharacterized protein CFAP92 isoform X5

    6. XM_054347394.1XP_054203369.1  uncharacterized protein CFAP92 isoform X6