U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    NF-YC1 nuclear factor Y, subunit C1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824019, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    NF-YC1
    Official Full Name
    nuclear factor Y, subunit C1
    Primary source
    TAIR:AT3G48590
    Locus tag
    AT3G48590
    See related
    Araport:AT3G48590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''nuclear factor Y; ATHAP5A; HAP5A; nuclear factor Y; subunit C1; subunit C1''
    Summary
    Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5A) and expressed in vegetative and reproductive tissues.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See NF-YC1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (18008593..18010018, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene xyloglucan endotransglucosylase/hydrolase 11 Neighboring gene SWIB complex BAF60b domain-containing protein Neighboring gene non-specific phospholipase C6

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. AtHAP5A regulates iron translocation in iron-deficient Arabidopsis thaliana. Zhu XF, et al. J Integr Plant Biol, 2020 Dec. PMID 33405355
    2. AtHAP5A modulates freezing stress resistance in Arabidopsis through binding to CCAAT motif of AtXTH21. Shi H, et al. New Phytol, 2014 Jul. PMID 24739069
    3. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Tang Y, et al. Mol Plant, 2017 Feb 13. PMID 27876642
    4. Cell cycle-dependent switch of up-and down-regulation of human hsp70 gene expression by interaction between c-Myc and CBF/NF-Y. Taira T, et al. J Biol Chem, 1999 Aug 20. PMID 10446203
    5. Multiple genes encoding the conserved CCAAT-box transcription factor complex are expressed in Arabidopsis. Edwards D, et al. Plant Physiol, 1998 Jul. PMID 9662544, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtHAP5A regulates iron translocation in iron-deficient Arabidopsis thaliana.
      Title: AtHAP5A regulates iron translocation in iron-deficient Arabidopsis thaliana.
    2. AtHAP5A modulates freezing stress resistance in Arabidopsis through binding to the CCAAT motif of AtXTH21.
      Title: AtHAP5A modulates freezing stress resistance in Arabidopsis through binding to CCAAT motif of AtXTH21.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_114718.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of photomorphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in nucleus IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    nuclear factor Y, subunit C1
    NP_190428.1
    • ''nuclear factor Y, subunit C1'' (NF-YC1); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C4 (TAIR:AT5G63470.2); Has 1348 Blast hits to 1348 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 449; Fungi - 353; Plants - 430; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18008593..18010018 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114718.4 → NP_190428.1  nuclear factor Y, subunit C1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190428.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23635, Q9SMP0
      UniProtKB/TrEMBL
      A0A178V5Y7, A0A5S9XJ36
      Conserved Domains (1) summary
      COG5208
      Location:47 → 178
      HAP5; CCAAT-binding factor, subunit C [Transcription]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SMP0.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools