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    Homeodomain-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826879, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Homeodomain-like superfamily protein
    Primary source
    TAIR:AT4G12670
    Locus tag
    AT4G12670
    See related
    Araport:AT4G12670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T20K18.20; T20K18_20
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (7472006..7475051)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene origin of replication complex 1B Neighboring gene RNA recognition motif (RRM)-containing protein Neighboring gene Endomembrane protein 70 protein family Neighboring gene uncharacterized protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_117336.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Homeodomain-like superfamily protein
    NP_193003.2
    • Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: response to jasmonic acid stimulus, response to salicylic acid stimulus; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: TRF-like 10 (TAIR:AT5G03780.1); Has 538 Blast hits to 521 proteins in 95 species: Archae - 0; Bacteria - 1; Metazoa - 236; Fungi - 18; Plants - 123; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7472006..7475051
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340797.1 → NP_001328952.1  Homeodomain-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYZ3, A0A1P8B686, A0A384L388, A0A5S9XSH2
      Conserved Domains (2) summary
      cd11660
      Location:528 → 582
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
      cd15489
      Location:49 → 94
      PHD_SF; PHD finger superfamily

    2. NM_117336.3 → NP_193003.2  Homeodomain-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193003.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q700D7, Q9SU19
      Conserved Domains (1) summary
      cd11660
      Location:418 → 472
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    Nucleotide Protein
    Heading Accession and Version

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