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    carboxyl-terminal proteinase-like protein, putative (DUF239) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827509, updated on 18-Sep-2024

    Summary

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    Official Full Name
    carboxyl-terminal proteinase-like protein, putative (DUF239)
    Primary source
    TAIR:AT4G17860
    Locus tag
    AT4G17860
    See related
    Araport:AT4G17860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6K21.40; T6K21_40
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (9924522..9926392, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene CAAX protease self-immunity protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_117895.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    carboxyl-terminal proteinase-like protein, putative (DUF239)
    NP_193520.3
    • Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT5G46200.1); Has 626 Blast hits to 604 proteins in 21 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 6; Plants - 616; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9924522..9926392 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117895.5 → NP_193520.3  carboxyl-terminal proteinase-like protein, putative (DUF239) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193520.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FQH0, A0MF77, Q1PE74
      Conserved Domains (2) summary
      pfam03080
      Location:131 → 350
      Neprosin
      pfam14365
      Location:28 → 86
      Neprosin_AP; Neprosin activation peptide
    Nucleotide Protein
    Heading Accession and Version

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