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    RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819908, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT3G07200
    Locus tag
    AT3G07200
    See related
    Araport:AT3G07200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (2290652..2292660)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene B-cell receptor-associated protein 31-like protein Neighboring gene RPM1-interacting protein 4 (RIN4) family protein Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of Arabidopsis SUMO-interacting proteins that regulate chromatin activity and developmental transitions. Elrouby N, et al. Proc Natl Acad Sci U S A, 2013 Dec 3. PMID 24255109, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084650.1
    NM_001337697.1
    NM_111600.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SUMO binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables SUMO-ubiquitin ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_001078119.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G48655.3); Has 5775 Blast hits to 5757 proteins in 891 species: Archae - 0; Bacteria - 0; Metazoa - 3770; Fungi - 730; Plants - 578; Viruses - 31; Other Eukaryotes - 666 (source: NCBI BLink).
    NP_187376.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G48655.3); Has 5779 Blast hits to 5761 proteins in 893 species: Archae - 0; Bacteria - 0; Metazoa - 3772; Fungi - 732; Plants - 578; Viruses - 31; Other Eukaryotes - 666 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2290652..2292660
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111600.5 → NP_187376.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187376.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V8N0, A0A384LAJ8, A0A5S9XB25, A0A654FFJ0, Q8GX56, Q9SFV0
      Conserved Domains (2) summary
      cd00162
      Location:127 → 164
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl17238
      Location:124 → 168
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. NM_001084650.1 → NP_001078119.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078119.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V8N0, A0A384LAJ8, A0A5S9XB25, A0A654FFJ0, Q8GX56, Q9SFV0
      Conserved Domains (2) summary
      cd00162
      Location:127 → 164
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl17238
      Location:124 → 168
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    3. NM_001337697.1 → NP_001327588.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V8N0, A0A384LAJ8, A0A5S9XB25, A0A654FFJ0, Q8GX56, Q9SFV0
      Conserved Domains (2) summary
      cd00162
      Location:127 → 164
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl17238
      Location:124 → 168
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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