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    RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824972, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT3G58030
    Locus tag
    AT3G58030
    See related
    Araport:AT3G58030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (21484156..21487102)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene plastoglobulin 34kD Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene tRNA-Ser Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Individual components of paired typical NLR immune receptors are regulated by distinct E3 ligases. Dong OX, et al. Nat Plants, 2018 Sep. PMID 30082764
    2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203193.1
    NM_115665.6
    NM_202724.3
    NM_202725.1

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within protein autoubiquitination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_001190122.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G42030.1).
    NP_191362.2
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G42030.1); Has 4227 Blast hits to 4219 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 2446; Fungi - 474; Plants - 832; Viruses - 22; Other Eukaryotes - 453 (source: NCBI BLink).
    NP_974453.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G42030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974454.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G42030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21484156..21487102
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203193.1 → NP_001190122.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190122.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJH0, A0A384L3Q5, A0A5S9XM00, Q8RXF2
      Conserved Domains (2) summary
      PLN03208
      Location:134 → 226
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd16745
      Location:137 → 180
      RING-HC_AtRMA_like; RING finger, HC subclass, found in Arabidopsis thaliana RING membrane-anchor proteins (AtRMAs) and similar proteins

    2. NM_115665.6 → NP_191362.2  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191362.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJH0, A0A384L3Q5, A0A5S9XM00, Q8RXF2
      Conserved Domains (2) summary
      PLN03208
      Location:134 → 226
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd16745
      Location:137 → 180
      RING-HC_AtRMA_like; RING finger, HC subclass, found in Arabidopsis thaliana RING membrane-anchor proteins (AtRMAs) and similar proteins

    3. NM_202724.3 → NP_974453.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974453.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJH0, A0A384L3Q5, A0A5S9XM00, Q8RXF2
      Conserved Domains (2) summary
      PLN03208
      Location:134 → 226
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd16745
      Location:137 → 180
      RING-HC_AtRMA_like; RING finger, HC subclass, found in Arabidopsis thaliana RING membrane-anchor proteins (AtRMAs) and similar proteins

    4. NM_202725.1 → NP_974454.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974454.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJH0, A0A384L3Q5, A0A5S9XM00, Q8RXF2
      Conserved Domains (2) summary
      PLN03208
      Location:134 → 226
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd16745
      Location:137 → 180
      RING-HC_AtRMA_like; RING finger, HC subclass, found in Arabidopsis thaliana RING membrane-anchor proteins (AtRMAs) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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