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    HVA22A HVA22 homologue A [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843793, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HVA22A
    Official Full Name
    HVA22 homologue A
    Primary source
    TAIR:AT1G74520
    Locus tag
    AT1G74520
    See related
    Araport:AT1G74520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATHVA22A; F1M20.20; F1M20_20; HVA22 homologue A
    Summary
    Part of the AtHVA22a family. Protein expression is ABA- and stress-inducible.
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    Genomic context

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    See HVA22A in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (28007961..28009451, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene cytochrome P450, family 98, subfamily A, polypeptide 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtHVA22a, a plant-specific homologue of Reep/DP1/Yop1 family proteins is involved in turnip mosaic virus propagation. Xue M, et al. Mol Plant Pathol, 2024 May. PMID 38767756, Free PMC Article
    2. AtHVA22 gene family in Arabidopsis: phylogenetic relationship, ABA and stress regulation, and tissue-specific expression. Chen CN, et al. Plant Mol Biol, 2002 Aug. PMID 12081371
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtHVA22a, a plant-specific homologue of Reep/DP1/Yop1 family proteins is involved in turnip mosaic virus propagation.
      Title: AtHVA22a, a plant-specific homologue of Reep/DP1/Yop1 family proteins is involved in turnip mosaic virus propagation.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001334652.1
    NM_106112.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within hyperosmotic salinity response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to abscisic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to water deprivation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    HVA22 homologue A
    NP_177592.1
    • HVA22 homologue A (HVA22A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to cold, hyperosmotic salinity response, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22 homologue C (TAIR:AT1G69700.1); Has 1523 Blast hits to 1523 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 690; Fungi - 215; Plants - 516; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28007961..28009451 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106112.3 → NP_177592.1  HVA22 homologue A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177592.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9S7V4
      UniProtKB/TrEMBL
      A0A178W5T6, A0A5S9WUC7, A0A7G2E5W7
      Conserved Domains (1) summary
      pfam03134
      Location:29 → 104
      TB2_DP1_HVA22; TB2/DP1, HVA22 family

    2. NM_001334652.1 → NP_001323240.1  HVA22 homologue A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9S7V4
      UniProtKB/TrEMBL
      A0A178W5T6, A0A5S9WUC7, A0A7G2E5W7
      Conserved Domains (1) summary
      pfam03134
      Location:29 → 104
      TB2_DP1_HVA22; TB2/DP1, HVA22 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S7V4.1

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