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    ckl4 casein kinase I-like 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829007, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ckl4
    Official Full Name
    casein kinase I-like 4
    Primary source
    TAIR:AT4G28860
    Locus tag
    AT4G28860
    See related
    Araport:AT4G28860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    casein kinase I-like 4; F16A16.30; F16A16_30
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    Genomic context

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    See ckl4 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Sequence:
    Chromosome: 4; NC_003075.7 (14246260..14249872)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit Neighboring gene xyloglucan endotransglucosylase/hydrolase 26 Neighboring gene mutator transposase MUDRA protein Neighboring gene casein kinase I-like 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis casein kinase1 proteins CK1.3 and CK1.4 phosphorylate cryptochrome2 to regulate blue light signaling. Tan ST, et al. Plant Cell, 2013 Jul. PMID 23897926, Free PMC Article
    2. Plasmodesmal-associated protein kinase in tobacco and Arabidopsis recognizes a subset of non-cell-autonomous proteins. Lee JY, et al. Plant Cell, 2005 Oct. PMID 16126836, Free PMC Article
    3. Members of the Plant CRK Superfamily Are Capable of Trans- and Autophosphorylation of Tyrosine Residues. Nemoto K, et al. J Biol Chem, 2015 Jul 3. PMID 25969537, Free PMC Article
    4. Autophosphorylation profiling of Arabidopsis protein kinases using the cell-free system. Nemoto K, et al. Phytochemistry, 2011 Jul. PMID 21477822
    5. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084996.2
    NM_119030.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity HDA PubMed 
    enables protein serine/threonine kinase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within blue light signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within photomorphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within protein autophosphorylation HDA PubMed 
    acts_upstream_of_or_within response to blue light IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    casein kinase I-like 4
    NP_001078465.1
    • casein kinase I-like 4 (ckl4); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I-like 3 (TAIR:AT4G28880.1); Has 66559 Blast hits to 66129 proteins in 2357 species: Archae - 56; Bacteria - 11194; Metazoa - 25356; Fungi - 7762; Plants - 10062; Viruses - 362; Other Eukaryotes - 11767 (source: NCBI BLink).
    NP_194615.2
    • casein kinase I-like 4 (ckl4); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I-like 3 (TAIR:AT4G28880.1); Has 66689 Blast hits to 66255 proteins in 2362 species: Archae - 56; Bacteria - 11242; Metazoa - 25400; Fungi - 7755; Plants - 10110; Viruses - 362; Other Eukaryotes - 11764 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14246260..14249872
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119030.4 → NP_194615.2  casein kinase I-like 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194615.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56YK2, Q67Y90, Q8LPI7, Q9SVV3
      UniProtKB/TrEMBL
      A0A178V3L4, A0A5S9XX82
      Conserved Domains (1) summary
      cl21453
      Location:8 → 282
      PKc_like; Protein Kinases, catalytic domain

    2. NM_001084996.2 → NP_001078465.1  casein kinase I-like 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078465.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3L4
      Conserved Domains (2) summary
      COG0515
      Location:8 → 359
      SPS1; Serine/threonine protein kinase [Signal transduction mechanisms]
      cl21453
      Location:8 → 282
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LPI7.1

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