U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    XYL4 beta-D-xylosidase 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836578, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    XYL4
    Official Full Name
    beta-D-xylosidase 4
    Primary source
    TAIR:AT5G64570
    Locus tag
    AT5G64570
    See related
    Araport:AT5G64570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4; ATBXL4; beta-D-xylosidase 4; MUB3.9; MUB3_9
    Summary
    Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See XYL4 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (25809975..25813648, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene loricrin-like protein Neighboring gene magnesium transporter 9 Neighboring gene ncRNA Neighboring gene AAA-type ATPase family protein Neighboring gene NYN domain protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Cell wall-localized BETA-XYLOSIDASE4 contributes to immunity of Arabidopsis against Botrytis cinerea. Guzha A, et al. Plant Physiol, 2022 Jun 27. PMID 35485198, Free PMC Article
    2. Purification and characterization of enzymes exhibiting beta-D-xylosidase activities in stem tissues of Arabidopsis. Minic Z, et al. Plant Physiol, 2004 Jun. PMID 15181203, Free PMC Article
    3. Contrasting Roles of the Apoplastic Aspartyl Protease APOPLASTIC, ENHANCED DISEASE SUSCEPTIBILITY1-DEPENDENT1 and LEGUME LECTIN-LIKE PROTEIN1 in Arabidopsis Systemic Acquired Resistance. Breitenbach HH, et al. Plant Physiol, 2014 Jun. PMID 24755512, Free PMC Article
    4. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128
    5. Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID. Mair A, et al. Elife, 2019 Sep 19. PMID 31535972, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001345643.1
    NM_001345644.1
    NM_125853.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables alpha-L-arabinofuranosidase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables xylan 1,4-beta-xylosidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables xylan 1,4-beta-xylosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within systemic acquired resistance IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within xylan catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in xylan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in apoplast HDA PubMed 
    located_in apoplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in membrane HDA PubMed 
    located_in plant-type cell wall HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    beta-D-xylosidase 4
    NP_201262.1
    • beta-D-xylosidase 4 (XYL4); FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: xylan catabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 3 (TAIR:AT5G09730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25809975..25813648 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125853.3 → NP_201262.1  beta-D-xylosidase 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201262.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56WR7, Q9FLG1
      UniProtKB/TrEMBL
      A0A178UTL8, A0A5S9YH10, A0A654GF32
      Conserved Domains (1) summary
      PLN03080
      Location:23 → 784
      PLN03080; Probable beta-xylosidase; Provisional

    2. NM_001345643.1 → NP_001331902.1  beta-D-xylosidase 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BF93, A0A7G2FPX9

    3. NM_001345644.1 → NP_001331903.1  beta-D-xylosidase 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFA0
      Conserved Domains (1) summary
      PLN03080
      Location:23 → 592
      PLN03080; Probable beta-xylosidase; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FLG1.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.