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    MYB3R2 myb domain protein 3r2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827977, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MYB3R2
    Official Full Name
    myb domain protein 3r2
    Primary source
    TAIR:AT4G00540
    Locus tag
    AT4G00540
    See related
    Araport:AT4G00540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATMYB3R2; C-MYB-LIKE TRANSCRIPTION FACTOR 3R-2; F6N23.19; F6N23_19; myb domain protein 3r2; MYB DOMAIN PROTEIN 3R2; MYB3R-2; PC-MYB2
    Summary
    Encodes a putative c-myb-like transcription factor. Member of a class of domain proteins containing structural features of the vertebrate c-Myb proto-oncoprotein, including the presence of three Myb motifs (R1,R2,R3).
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    Genomic context

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    See MYB3R2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (234597..237582, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Acyl-CoA thioesterase family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene UvrABC system protein A Neighboring gene digalactosyl diacylglycerol deficient 2 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene NAD-dependent malic enzyme 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A systematic survey in Arabidopsis thaliana of transcription factors that modulate circadian parameters. Hanano S, et al. BMC Genomics, 2008 Apr 21. PMID 18426557, Free PMC Article
    2. The TOPLESS interactome: a framework for gene repression in Arabidopsis. Causier B, et al. Plant Physiol, 2012 Jan. PMID 22065421, Free PMC Article
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_116278.1
    NM_178945.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables sequence-specific DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of circadian rhythm IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb domain protein 3r2
    NP_567179.1
    • myb domain protein 3r2 (MYB3R2); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like protein (TAIR:AT4G32730.2); Has 13272 Blast hits to 8134 proteins in 555 species: Archae - 0; Bacteria - 0; Metazoa - 1137; Fungi - 983; Plants - 8207; Viruses - 4; Other Eukaryotes - 2941 (source: NCBI BLink).
    NP_849276.2
    • myb domain protein 3r2 (MYB3R2); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like protein (TAIR:AT4G32730.2); Has 14074 Blast hits to 8120 proteins in 551 species: Archae - 0; Bacteria - 0; Metazoa - 1200; Fungi - 968; Plants - 8858; Viruses - 6; Other Eukaryotes - 3042 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      234597..237582 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116278.1 → NP_567179.1  myb domain protein 3r2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567179.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65263, Q9SPN3
      UniProtKB/TrEMBL
      A0A5S9XQE0, A0A654FKM8
      Conserved Domains (2) summary
      PLN03091
      Location:99 → 207
      PLN03091; hypothetical protein; Provisional
      pfam13921
      Location:47 → 112
      Myb_DNA-bind_6; Myb-like DNA-binding domain

    2. NM_178945.2 → NP_849276.2  myb domain protein 3r2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849276.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UUU0, F4JHD4
      Conserved Domains (3) summary
      smart00717
      Location:103 → 154
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      pfam00249
      Location:158 → 200
      Myb_DNA-binding; Myb-like DNA-binding domain
      pfam13921
      Location:106 → 166
      Myb_DNA-bind_6; Myb-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SPN3.1

    Gene LinkOut

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