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    RTL1 RNAse II-like 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827212, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RTL1
    Official Full Name
    RNAse II-like 1
    Primary source
    TAIR:AT4G15417
    Locus tag
    AT4G15417
    See related
    Araport:AT4G15417
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRTL1; RNAse II-like 1
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    Genomic context

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    See RTL1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (8821651..8823076)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma Neighboring gene Protein phosphatase 2A regulatory B subunit family protein Neighboring gene Ubiquitin fusion degradation UFD1 family protein Neighboring gene ERD (early-responsive to dehydration stress) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_148331.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ribonuclease III activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNAse II-like 1
    NP_680697.4
    • RNAse II-like 1 (RTL1); FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 2 (TAIR:AT3G20420.1); Has 6428 Blast hits to 6386 proteins in 2315 species: Archae - 23; Bacteria - 4325; Metazoa - 271; Fungi - 247; Plants - 236; Viruses - 14; Other Eukaryotes - 1312 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8821651..8823076
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341042.1 → NP_001328413.1  RNAse II-like 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4K5, A0A654FPM8

    2. NM_148331.6 → NP_680697.4  RNAse II-like 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_680697.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V2L0, A0A5S9XSM9, F4JK37
      Conserved Domains (2) summary
      cd00593
      Location:44 → 191
      RIBOc; Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional ...
      cl00054
      Location:197 → 255
      DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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