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    D-lactate dehydrogenase (DUF668) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830767, updated on 18-Sep-2024

    Summary

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    Official Full Name
    D-lactate dehydrogenase (DUF668)
    Primary source
    TAIR:AT5G08660
    Locus tag
    AT5G08660
    See related
    Araport:AT5G08660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    PSI3; PSK SIMULATOR 3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    13
    Sequence:
    Chromosome: 5; NC_003076.8 (2813870..2818139)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene flavonol synthase 1 Neighboring gene Small GTP-binding protein Neighboring gene ATP synthase alpha/beta family protein Neighboring gene ATP synthase alpha/beta family protein Neighboring gene ATP synthase alpha/beta family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The PSI family of nuclear proteins is required for growth in arabidopsis. Stührwohldt N, et al. Plant Mol Biol, 2014 Oct. PMID 25062973
    2. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PSI3 protein has a role in Arabidopsis growth.
      Title: The PSI family of nuclear proteins is required for growth in arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001343028.1
    NM_001343029.1
    NM_147849.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of growth IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    D-lactate dehydrogenase (DUF668)
    NP_680154.2
    • Protein of unknown function (DUF668); INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700), Protein of unknown function DUF3475 (InterPro:IPR021864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF668) (TAIR:AT1G34320.1); Has 342 Blast hits to 276 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 333; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2813870..2818139
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343027.1 → NP_001331590.1  D-lactate dehydrogenase (DUF668) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BEB8
      Conserved Domains (2) summary
      pfam05003
      Location:371 → 455
      DUF668; Protein of unknown function (DUF668)
      pfam11961
      Location:151 → 207
      DUF3475; Domain of unknown function (DUF3475)

    2. NM_147849.4 → NP_680154.2  D-lactate dehydrogenase (DUF668) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_680154.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178UKE1, P0DO24, Q9C5B1
      UniProtKB/TrEMBL
      A0A384KS96, A0A7G2F652
      Conserved Domains (2) summary
      pfam05003
      Location:371 → 455
      DUF668; Protein of unknown function (DUF668)
      pfam11961
      Location:151 → 207
      DUF3475; Domain of unknown function (DUF3475)

    3. NM_001343028.1 → NP_001331591.1  D-lactate dehydrogenase (DUF668) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178UKE1, P0DO24, Q9C5B1
      UniProtKB/TrEMBL
      A0A384KS96, A0A7G2F652
      Conserved Domains (2) summary
      pfam05003
      Location:371 → 455
      DUF668; Protein of unknown function (DUF668)
      pfam11961
      Location:151 → 207
      DUF3475; Domain of unknown function (DUF3475)

    4. NM_001343029.1 → NP_001331592.1  D-lactate dehydrogenase (DUF668) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178UKE1, P0DO24, Q9C5B1
      UniProtKB/TrEMBL
      A0A384KS96, A0A7G2F652
      Conserved Domains (2) summary
      pfam05003
      Location:371 → 455
      DUF668; Protein of unknown function (DUF668)
      pfam11961
      Location:151 → 207
      DUF3475; Domain of unknown function (DUF3475)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0DO24.1

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