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    TAF14 TBP-associated factor 14 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816312, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TAF14
    Official Full Name
    TBP-associated factor 14
    Primary source
    TAIR:AT2G18000
    Locus tag
    AT2G18000
    See related
    Araport:AT2G18000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    homolog of yeast YAF9 b; T27K22.13; T27K22_13; TBP-associated factor 14; YAF9b
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    Genomic context

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    See TAF14 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (7828976..7830898)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Sec1/munc18-like (SM) proteins superfamily Neighboring gene polyamine-modulated factor 1-binding protein Neighboring gene ncRNA Neighboring gene SAUR-like auxin-responsive protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis ortholog of the YEATS domain containing protein YAF9a regulates flowering by controlling H4 acetylation levels at the FLC locus. Zacharaki V, et al. Plant Sci, 2012 Nov. PMID 23017898
    2. The FRIGIDA complex activates transcription of FLC, a strong flowering repressor in Arabidopsis, by recruiting chromatin modification factors. Choi K, et al. Plant Cell, 2011 Jan. PMID 21282526, Free PMC Article
    3. Yeast two-hybrid map of Arabidopsis TFIID. Lawit SJ, et al. Plant Mol Biol, 2007 May. PMID 17340043
    4. AtEAF1 is a potential platform protein for Arabidopsis NuA4 acetyltransferase complex. Bieluszewski T, et al. BMC Plant Biol, 2015 Mar 5. PMID 25849764, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data indicate that two ortholog of the YEATS domain containing protein At5g45600 and At2g18000 were identified, which were designated as YAF9a and YAF9b/TAF14.
      Title: The Arabidopsis ortholog of the YEATS domain containing protein YAF9a regulates flowering by controlling H4 acetylation levels at the FLC locus.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of photoperiodism, flowering IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TBP-associated factor 14
    NP_001189547.1
    • TBP-associated factor 14 (TAF14); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: YEATS (InterPro:IPR005033); BEST Arabidopsis thaliana protein match is: YEATS family protein (TAIR:AT5G45600.2).
    NP_179391.1
    • TBP-associated factor 14 (TAF14); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: YEATS (InterPro:IPR005033); BEST Arabidopsis thaliana protein match is: YEATS family protein (TAIR:AT5G45600.1); Has 784 Blast hits to 784 proteins in 216 species: Archae - 0; Bacteria - 2; Metazoa - 356; Fungi - 265; Plants - 64; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7828976..7830898
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202618.2 → NP_001189547.1  TBP-associated factor 14 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189547.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IPK2, Q9SL46
      UniProtKB/TrEMBL
      A0A5S9WYX1, A0A654EVD4
      Conserved Domains (1) summary
      cd16910
      Location:40 → 173
      YEATS_TFIID14_like; YEATS domain found in transcription initiation factor TFIID subunit 14 and similar proteins

    2. NM_127356.1 → NP_179391.1  TBP-associated factor 14 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179391.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IPK2
      Conserved Domains (1) summary
      pfam03366
      Location:62 → 142
      YEATS; YEATS family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IPK2.1

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