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    CCCH-type zinc finger protein with ARM repeat domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831125, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CCCH-type zinc finger protein with ARM repeat domain-containing protein
    Primary source
    TAIR:AT5G12850
    Locus tag
    AT5G12850
    See related
    Araport:AT5G12850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T24H18.20; T24H18_20
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (4056086..4059580)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene calmodulin-domain protein kinase 7 Neighboring gene nuclear factor Y, subunit A1 Neighboring gene dicarboxylate transporter 1 Neighboring gene myb domain protein 46 Neighboring gene proline-rich family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358
    2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_121288.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CCCH-type zinc finger protein with ARM repeat domain-containing protein
    NP_196789.1
    • CCCH-type zinc finger protein with ARM repeat domain; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: CCCH-type zinc finger protein with ARM repeat domain (TAIR:AT2G41900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4056086..4059580
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121288.5 → NP_196789.1  CCCH-type zinc finger protein with ARM repeat domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196789.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L3W6, Q9LXV4
      UniProtKB/TrEMBL
      A0A178UHK2, A0A5S9Y4E9
      Conserved Domains (3) summary
      smart00356
      Location:301 → 322
      ZnF_C3H1; zinc finger
      sd00045
      Location:37 → 65
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:85 → 152
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LXV4.1

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