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    Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816445, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT2G19280
    Locus tag
    AT2G19280
    See related
    Araport:AT2G19280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27F23.8; F27F23_8
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (8362387..8366144)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene mitotic checkpoint protein PRCC-carboxy-term protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene HSP20-like chaperones superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001202623.2
    NM_127485.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_001189552.1
    • Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G02150.1).
    NP_179518.1
    • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G02150.1); Has 48105 Blast hits to 13725 proteins in 297 species: Archae - 3; Bacteria - 51; Metazoa - 644; Fungi - 771; Plants - 45193; Viruses - 0; Other Eukaryotes - 1443 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8362387..8366144
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335630.1 → NP_001325054.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64561, Q6NKW7

    2. NM_001335631.1 → NP_001325053.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64561, Q6NKW7

    3. NM_127485.4 → NP_179518.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179518.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64561, Q6NKW7
      Conserved Domains (4) summary
      TIGR00756
      Location:479 → 513
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:550 → 577
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:613 → 645
      PPR_1; PPR repeat
      pfam13041
      Location:477 → 523
      PPR_2; PPR repeat family

    4. NM_001202623.2 → NP_001189552.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189552.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64561, Q6NKW7
      Conserved Domains (4) summary
      TIGR00756
      Location:479 → 513
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:550 → 577
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:613 → 645
      PPR_1; PPR repeat
      pfam13041
      Location:477 → 523
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NKW7.2

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