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    binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834820, updated on 18-Sep-2024

    Summary

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    Official Full Name
    binding protein
    Primary source
    TAIR:AT5G47690
    Locus tag
    AT5G47690
    See related
    Araport:AT5G47690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    33
    Sequence:
    Chromosome: 5; NC_003076.8 (19317668..19327431)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene nudix hydrolase homolog 2 Neighboring gene Homeodomain-like superfamily protein Neighboring gene nuclear factor Y, subunit B6 Neighboring gene tRNA (guanine(9)-N1)-methyltransferase-like protein Neighboring gene 60S acidic ribosomal protein family Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Involvement of the Cohesin Cofactor PDS5 (SPO76) During Meiosis and DNA Repair in Arabidopsis thaliana. Pradillo M, et al. Front Plant Sci, 2015. PMID 26648949, Free PMC Article
    2. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    3. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    4. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    5. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_001125917.1
    NM_001125918.2
    NM_124143.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA recombination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within DNA repair IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in DNA repair IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in homologous recombination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within microsporogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in mitotic sister chromatid cohesion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in mitochondrion HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    binding protein
    NP_001119389.1
    • binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: cotyledon, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G77600.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001119390.1
    • binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: cotyledon, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G77600.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_199580.3
    • binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus, chloroplast; EXPRESSED IN: cotyledon, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G77600.2); Has 16808 Blast hits to 11211 proteins in 698 species: Archae - 33; Bacteria - 718; Metazoa - 7012; Fungi - 1729; Plants - 1224; Viruses - 236; Other Eukaryotes - 5856 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19317668..19327431
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344741.1 → NP_001331466.1  binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U843, A0A1P8BDX9
      Conserved Domains (4) summary
      PTZ00108
      Location:1189 → 1454
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
      TIGR00927
      Location:1378 → 1495
      2A1904; K+-dependent Na+/Ca+ exchanger
      cd20404
      Location:1272 → 1322
      Tudor_Agenet_AtEML-like; Tudor-like Agenet domain found in Arabidopsis thaliana proteins EMSY-LIKE 1-4 (AtEML1-4) and similar proteins
      cd19953
      Location:2 → 546
      PDS5; Sister chromatid cohesion protein PDS5

    2. NM_001125918.2 → NP_001119390.1  binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119390.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U843, A0A178U9B2
      Conserved Domains (4) summary
      PTZ00108
      Location:1286 → 1551
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
      TIGR00927
      Location:1475 → 1592
      2A1904; K+-dependent Na+/Ca+ exchanger
      cd20404
      Location:1369 → 1419
      Tudor_Agenet_AtEML-like; Tudor-like Agenet domain found in Arabidopsis thaliana proteins EMSY-LIKE 1-4 (AtEML1-4) and similar proteins
      cd19953
      Location:26 → 643
      PDS5; Sister chromatid cohesion protein PDS5

    3. NM_001125917.1 → NP_001119389.1  binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119389.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U7G8, A0A178U843, F4JYL8
      Conserved Domains (1) summary
      cl00909
      Location:1509 → 1589
      Ribosomal_L24e_L24; Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor ...

    4. NM_124143.4 → NP_199580.3  binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199580.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B3H5K3, B6EUB3, Q0WNL7, Q9FIL0
      UniProtKB/TrEMBL
      A0A178U843
      Conserved Domains (4) summary
      PTZ00108
      Location:1286 → 1533
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
      TIGR00927
      Location:1474 → 1590
      2A1904; K+-dependent Na+/Ca+ exchanger
      cd20404
      Location:1368 → 1418
      Tudor_Agenet_AtEML-like; Tudor-like Agenet domain found in Arabidopsis thaliana proteins EMSY-LIKE 1-4 (AtEML1-4) and similar proteins
      cd19953
      Location:26 → 643
      PDS5; Sister chromatid cohesion protein PDS5
    Nucleotide Protein
    Heading Accession and Version

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