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    late embryogenesis abundant domain-containing protein / LEA domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818856, updated on 18-Sep-2024

    Summary

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    Official Full Name
    late embryogenesis abundant domain-containing protein / LEA domain-containing protein
    Primary source
    TAIR:AT2G42560
    Locus tag
    AT2G42560
    See related
    Araport:AT2G42560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14N22.17; F14N22_17
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (17714638..17716912, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene cold-regulated 15a Neighboring gene Protein kinase superfamily protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 39 Neighboring gene tetratricopetide-repeat thioredoxin-like 3 Neighboring gene general regulatory factor 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Folding of intrinsically disordered plant LEA proteins is driven by glycerol-induced crowding and the presence of membranes. Bremer A, et al. FEBS J, 2017 Mar. PMID 28109185
    2. Ubiquitin-Mediated Proteasomal Degradation of Oleosins is Involved in Oil Body Mobilization During Post-Germinative Seedling Growth in Arabidopsis. Deruyffelaere C, et al. Plant Cell Physiol, 2015 Jul. PMID 25907570
    3. The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress. Candat A, et al. Plant Cell, 2014 Jul. PMID 25005920, Free PMC Article
    4. The Arabidopsis metacaspase9 degradome. Tsiatsiani L, et al. Plant Cell, 2013 Aug. PMID 23964026, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The C- and N-terminal extensions of LEA25 were important in cryoprotection, as the central domain itself (2H, 4H) only provided a low level of protection. [LEA25]
      Title: Folding of intrinsically disordered plant LEA proteins is driven by glycerol-induced crowding and the presence of membranes.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_129817.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cold acclimation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    late embryogenesis abundant domain-containing protein / LEA domain-containing protein
    NP_181784.1
    • late embryogenesis abundant domain-containing protein / LEA domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: embryonic cell protein 63 (TAIR:AT2G36640.1); Has 15488 Blast hits to 9741 proteins in 1566 species: Archae - 82; Bacteria - 6528; Metazoa - 2119; Fungi - 827; Plants - 2067; Viruses - 138; Other Eukaryotes - 3727 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17714638..17716912 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129817.2 → NP_181784.1  late embryogenesis abundant domain-containing protein / LEA domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181784.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VZM4, A0A654F2M0, Q9SIN3
      Conserved Domains (2) summary
      PTZ00121
      Location:123 → 635
      PTZ00121; MAEBL; Provisional
      PRK05035
      Location:255 → 466
      PRK05035; electron transport complex protein RnfC; Provisional
    Nucleotide Protein
    Heading Accession and Version

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