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    Plastid-lipid associated protein PAP / fibrillin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828319, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Plastid-lipid associated protein PAP / fibrillin family protein
    Primary source
    TAIR:AT4G22240
    Locus tag
    AT4G22240
    See related
    Araport:AT4G22240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    FBN1b; fibrillin 1b; T10I14.70; T10I14_70
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (11765803..11767422, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene defensin-like protein Neighboring gene ncRNA Neighboring gene defensin-like protein Neighboring gene RING/U-box superfamily protein Neighboring gene Alternative oxidase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis fibrillin 1-2 subfamily members exert their functions via specific protein-protein interactions. Torres-Romero D, et al. J Exp Bot, 2022 Jan 27. PMID 34651644, Free PMC Article
    2. A dual-targeted purple acid phosphatase in Arabidopsis thaliana moderates carbon metabolism and its overexpression leads to faster plant growth and higher seed yield. Sun F, et al. New Phytol, 2012 Apr. PMID 22269069
    3. Plant lipid-associated fibrillin proteins condition jasmonate production under photosynthetic stress. Youssef A, et al. Plant J, 2010 Feb 1. PMID 19906042
    4. Fibrillin2 in chloroplast plastoglobules participates in photoprotection and jasmonate-induced senescence. Kim I, et al. Plant Physiol, 2022 Jun 27. PMID 35404409, Free PMC Article
    5. Tissue-Specific Regulation of Plastid Protein Import via Transit-Peptide Motifs. Chu CC, et al. Plant Cell, 2020 Apr. PMID 32075863, Free PMC Article

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis fibrillin 1-2 subfamily members exert their functions via specific protein-protein interactions.
      Title: Arabidopsis fibrillin 1-2 subfamily members exert their functions via specific protein-protein interactions.
    2. fibrillin 1a and 1b, interact with each other via a head-to-tail mechanism [fibrillin 1b]
      Title: Arabidopsis thaliana plastoglobule-associated fibrillin 1a interacts with fibrillin 1b in vivo.
    3. This publication concludes a new physiological role for JA, namely acclimation of chloroplasts, and that light/cold stress-related JA biosynthesis is conditioned by the accumulation of plastoglobule-associated FIB1-2 proteins. [FIB1b]
      Title: Plant lipid-associated fibrillin proteins condition jasmonate production under photosynthetic stress.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_118350.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within photoprotection IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid HDA PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plastid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plastoglobule HDA PubMed 
    located_in thylakoid HDA PubMed 
    located_in thylakoid lumen HDA PubMed 

    General protein information

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    Preferred Names
    Plastid-lipid associated protein PAP / fibrillin family protein
    NP_193955.1
    • Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: fruit, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: fibrillin (TAIR:AT4G04020.1); Has 461 Blast hits to 460 proteins in 78 species: Archae - 0; Bacteria - 75; Metazoa - 0; Fungi - 0; Plants - 360; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11765803..11767422 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118350.3 → NP_193955.1  Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193955.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49629, Q8LFZ5, Q8VXU7
      UniProtKB/TrEMBL
      A0A5S9XUR1, A0A7G2F1I0
      Conserved Domains (1) summary
      pfam04755
      Location:84 → 301
      PAP_fibrillin
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O49629.1

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