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    Ubiquitin-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826414, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ubiquitin-like superfamily protein
    Primary source
    TAIR:AT4G01000
    Locus tag
    AT4G01000
    See related
    Araport:AT4G01000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3I3.20; F3I3_20
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (431516..434029, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tRNA-Gln Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Transcription factor jumonji (jmjC) domain-containing protein Neighboring gene cyclic nucleotide-gated channel 13 Neighboring gene helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interaction of ubiquitin-like protein SILENCING DEFECTIVE 2 with LIKE HETEROCHROMATIN PROTEIN 1 is required for regulation of anthocyanin biosynthesis in Arabidopsis thaliana in response to sucrose. Zhang Z, et al. New Phytol, 2024 Aug. PMID 38558017
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Interaction of ubiquitin-like protein SILENCING DEFECTIVE 2 with LIKE HETEROCHROMATIN PROTEIN 1 is required for regulation of anthocyanin biosynthesis in Arabidopsis thaliana in response to sucrose.
      Title: Interaction of ubiquitin-like protein SILENCING DEFECTIVE 2 with LIKE HETEROCHROMATIN PROTEIN 1 is required for regulation of anthocyanin biosynthesis in Arabidopsis thaliana in response to sucrose.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001340294.1
    NM_116328.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to sucrose IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Ubiquitin-like superfamily protein
    NP_001319838.1
    • Ubiquitin-like superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT3G06455.1); Has 9247 Blast hits to 4627 proteins in 669 species: Archae - 0; Bacteria - 50; Metazoa - 4022; Fungi - 1172; Plants - 2220; Viruses - 170; Other Eukaryotes - 1613 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      431516..434029 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340294.1 → NP_001319838.1  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FKR0, Q9SV28

    2. NM_116328.6 → NP_192009.1  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192009.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FKR0, Q9SV28
      Conserved Domains (3) summary
      smart00213
      Location:9 → 77
      UBQ; Ubiquitin homologues
      pfam13297
      Location:355 → 402
      Telomere_Sde2_2; Telomere stability C-terminal
      cl00155
      Location:10 → 156
      UBQ; Ubiquitin-like proteins
    Nucleotide Protein
    Heading Accession and Version

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