GTA2 global transcription factor group A2 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: GTA2
Official Full Name: global transcription factor group A2
Primary source: TAIR:AT4G08350
Locus tag: AT4G08350
See related: Araport:AT4G08350
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: global transcription factor group A2; GTA02; SPT5-2; T28D5.40; T28D5_40
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Genomic context

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See GTA2 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 22

Sequence:: Chromosome: 4; NC_003075.7 (5286158..5292270)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

MASC_STS12333 (e-PCR)
- UniSTS:258532

Homology

Orthologs from OrthoDB

NM_116904.6

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription elongation	IEA Inferred from Electronic Annotation more info
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info
involved_in transcription elongation-coupled chromatin remodeling	IEA Inferred from Electronic Annotation more info
involved_in translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info
located_in ribosome	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: global transcription factor group A2

NP_192575.3

global transcription factor group A2 (GTA2); FUNCTIONS IN: transcription elongation regulator activity, structural constituent of ribosome, sequence-specific DNA binding transcription factor activity; INVOLVED IN: translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter; LOCATED IN: ribosome, intracellular; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Transcription elongation factor Spt5 (InterPro:IPR017071), Transcription antitermination protein, NusG, N-terminal (InterPro:IPR006645), KOW (InterPro:IPR005824), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), Transcription elongation factor Spt5, NGN domain (InterPro:IPR005100); BEST Arabidopsis thaliana protein match is: Transcription elongation factor Spt5 (TAIR:AT2G34210.1); Has 14630 Blast hits to 9620 proteins in 607 species: Archae - 121; Bacteria - 647; Metazoa - 6069; Fungi - 2592; Plants - 1061; Viruses - 307; Other Eukaryotes - 3833 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

5286158..5292270

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_116904.6 → NP_192575.3 global transcription factor group A2 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_192575.3

Status: REVIEWED

UniProtKB/Swiss-Prot

F4JFX7, Q9STN3

UniProtKB/TrEMBL

A0A178UTQ8, A0A5S9XQF4

Conserved Domains (5) summary

cd09888
Location:183 → 266

NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)

COG5164
Location:334 → 888

SPT5; Transcription elongation factor [Transcription]

cd06081
Location:277 → 314

KOW_Spt5_1; KOW domain of Spt5, repeat 1

cd06086
Location:982 → 1039

KOW_Spt5_6; KOW domain of Spt5, repeat 6

pfam11942
Location:105 → 177

Spt5_N; Spt5 transcription elongation factor, acidic N-terminal