U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    AHL19 AT-hook motif nuclear-localized protein 19 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819613, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    AHL19
    Official Full Name
    AT-hook motif nuclear-localized protein 19
    Primary source
    TAIR:AT3G04570
    Locus tag
    AT3G04570
    See related
    Araport:AT3G04570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT-hook motif nuclear-localized protein 19; F7O18.4; F7O18_4
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See AHL19 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (1230746..1232451)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene rubisco accumulation factor-like protein Neighboring gene ncRNA Neighboring gene nucleolar/coiled-body phosphoprotein Neighboring gene ncRNA Neighboring gene Signal transduction histidine kinase, hybrid-type, ethylene sensor Neighboring gene AT hook motif DNA-binding family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Arabidopsis thaliana DNA-binding protein AHL19 mediates verticillium wilt resistance. Yadeta KA, et al. Mol Plant Microbe Interact, 2011 Dec. PMID 21864046
    2. Overexpression of AHL20 negatively regulates defenses in Arabidopsis. Lu H, et al. J Integr Plant Biol, 2010 Sep. PMID 20738724
    3. Overexpression of AtAHL20 causes delayed flowering in Arabidopsis via repression of FT expression. Tayengwa R, et al. BMC Plant Biol, 2020 Dec 11. PMID 33308168, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AHL19 acts as a positive regulator of plant defense.
      Title: The Arabidopsis thaliana DNA-binding protein AHL19 mediates verticillium wilt resistance.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    NM_111328.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables minor groove of adenine-thymine-rich DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of innate immune response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    AT-hook motif nuclear-localized protein 19
    NP_566232.1
    • AT-hook motif nuclear-localized protein 19 (AHL19); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 20 (TAIR:AT4G14465.1); Has 7030 Blast hits to 3903 proteins in 396 species: Archae - 17; Bacteria - 3505; Metazoa - 1173; Fungi - 108; Plants - 1514; Viruses - 84; Other Eukaryotes - 629 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1230746..1232451
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111328.3 → NP_566232.1  AT-hook motif nuclear-localized protein 19 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566232.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SR17
      UniProtKB/TrEMBL
      A0A178VG97, A0A5S9X9F2, A0A654F9B4
      Conserved Domains (1) summary
      cd11378
      Location:108 → 199
      DUF296; Domain of unknown function found in archaea, bacteria, and plants
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SR17.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools