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    Frigida-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832780, updated on 18-Sep-2024

    Summary

    Official Full Name
    Frigida-like protein
    Primary source
    TAIR:AT5G27220
    Locus tag
    AT5G27220
    See related
    Araport:AT5G27220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T21B4.130; T21B4_130
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    Genomic context

    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (9578373..9582960)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene acyl carrier protein 5 Neighboring gene Protein of unknown function, transmembrane-40 Neighboring gene Frigida-like protein Neighboring gene Plant self-incompatibility protein S1 family

    General gene information

    NM_001343994.1
    NM_001343995.1
    NM_001343996.1
    NM_122604.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Frigida-like protein
    NP_001318661.1
    • Frigida-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      9578373..9582960
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343994.1NP_001318661.1  Frigida-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UR23, O04650
    2. NM_001343995.1NP_001330216.1  Frigida-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BA40, A0A654G4R9
    3. NM_122604.1NP_198074.1  Frigida-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198074.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UR23, O04650
      Conserved Domains (2) summary
      TIGR04523
      Location:87630
      Mplasa_alph_rch; helix-rich Mycoplasma protein
      pfam07899
      Location:8361098
      Frigida; Frigida-like protein
    4. NM_001343996.1NP_001330217.1  Frigida-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BA40, A0A654G4R9