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    DI19 drought-induced 19 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842081, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DI19
    Official Full Name
    drought-induced 19
    Primary source
    TAIR:AT1G56280
    Locus tag
    AT1G56280
    See related
    Araport:AT1G56280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATDI19; drought-induced 19; F14G9.11; F14G9_11
    Summary
    Encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The increase in transcript level is independent from abscisic acid level. Sequence is not similar to any protein of known function. It appears to be a member of plant-specific gene family. It's phosphorylated by AtCPK11 in a Ca(2+)-dependent manner at Thr105 and Ser107 within the AtDi19 bipartite nuclear localization signal
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    Genomic context

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    See DI19 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (21072855..21074877, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene telomere-capping, CST complex subunit Neighboring gene RPB1a Neighboring gene CwfJ-like family protein Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis drought-induced protein Di19-3 participates in plant response to drought and high salinity stresses. Qin LX, et al. Plant Mol Biol, 2014 Dec. PMID 25218132
    2. A novel yeast two-hybrid approach to identify CDPK substrates: characterization of the interaction between AtCPK11 and AtDi19, a nuclear zinc finger protein. Rodriguez Milla MA, et al. FEBS Lett, 2006 Feb 6. PMID 16438971
    3. Arabidopsis Di19 functions as a transcription factor and modulates PR1, PR2, and PR5 expression in response to drought stress. Liu WX, et al. Mol Plant, 2013 Sep. PMID 23404561
    4. Abscisic acid-dependent and -independent regulation of gene expression by progressive drought in Arabidopsis thaliana. Gosti F, et al. Mol Gen Genet, 1995 Jan 6. PMID 7823904
    5. The Arabidopsis AtDi19 gene family encodes a novel type of Cys2/His2 zinc-finger protein implicated in ABA-independent dehydration, high-salinity stress and light signaling pathways. Milla MA, et al. Plant Mol Biol, 2006 May. PMID 16786289

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtDi19-3 may participate in plant response to drought and salt stresses in an abscisic acid (ABA)-dependent manner.
      Title: Arabidopsis drought-induced protein Di19-3 participates in plant response to drought and high salinity stresses.
    2. Di19, a new type of transcription factor, directly up-regulates the expressions of PR1, PR2, and PR5 in response to drought stress.
      Title: Arabidopsis Di19 functions as a transcription factor and modulates PR1, PR2, and PR5 expression in response to drought stress.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001333775.1
    NM_104507.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    NOT involved_in response to abscisic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to water deprivation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    drought-induced 19
    NP_001319253.1
    • drought-induced 19; CONTAINS InterPro DOMAIN/s: Drought induced 19/ RING finger protein 114 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: Drought-responsive family protein (TAIR:AT3G05700.1).
    NP_564715.4
    • drought-induced 19 (DI19); CONTAINS InterPro DOMAIN/s: Drought induced 19/ RING finger protein 114 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: Drought-responsive family protein (TAIR:AT3G05700.1); Has 243 Blast hits to 243 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 238; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21072855..21074877 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104507.4 → NP_564715.4  drought-induced 19 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564715.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I523, Q39083, Q56ZC1, Q94AR0, Q9C7K3
      UniProtKB/TrEMBL
      C0Z2G6
      Conserved Domains (2) summary
      pfam05605
      Location:33 → 80
      zf-Di19; Drought induced 19 protein (Di19), zinc-binding
      pfam14571
      Location:101 → 196
      Di19_C; Stress-induced protein Di19, C-terminal

    2. NM_001333775.1 → NP_001319253.1  drought-induced 19 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W4D0, F4I522
    Nucleotide Protein
    Heading Accession and Version

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