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    Paired amphipathic helix (PAH2) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831356, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Paired amphipathic helix (PAH2) superfamily protein
    Primary source
    TAIR:AT5G15040
    Locus tag
    AT5G15040
    See related
    Araport:AT5G15040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2G14.160; F2G14_160
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (4869754..4870741, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene paired amphipathic helix Sin3-like protein Neighboring gene paired amphipathic helix Sin3-like protein Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene Lateral organ boundaries (LOB) domain family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Paired amphipathic helix (PAH2) superfamily protein
    NP_001318564.1
    • Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 2 (TAIR:AT5G15020.1); Has 562 Blast hits to 542 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 194; Fungi - 132; Plants - 211; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4869754..4870741 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343381.1 → NP_001318564.1  Paired amphipathic helix (PAH2) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y484, Q9LFQ1
      Conserved Domains (1) summary
      pfam02671
      Location:20 → 64
      PAH; Paired amphipathic helix repeat

    2. NM_001343382.1 → NP_001332029.1  Paired amphipathic helix (PAH2) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y484, Q9LFQ1
      Conserved Domains (1) summary
      pfam02671
      Location:20 → 64
      PAH; Paired amphipathic helix repeat

    3. NM_001343383.1 → NP_001332030.1  Paired amphipathic helix (PAH2) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y484, Q9LFQ1
      Conserved Domains (1) summary
      pfam02671
      Location:20 → 64
      PAH; Paired amphipathic helix repeat
    Nucleotide Protein
    Heading Accession and Version

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