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    Histone superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837440, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Histone superfamily protein
    Primary source
    TAIR:AT1G09200
    Locus tag
    AT1G09200
    See related
    Araport:AT1G09200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    H3.1; histone 3.1; T12M4.9
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (2971571..2972334, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Ppx-GppA phosphatase Neighboring gene calreticulin 1b Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dynamic changes in genome-wide histone H3 lysine 4 methylation patterns in response to dehydration stress in Arabidopsis thaliana. van Dijk K, et al. BMC Plant Biol, 2010 Nov 5. PMID 21050490, Free PMC Article
    2. H3K27me3 profiling of the endosperm implies exclusion of polycomb group protein targeting by DNA methylation. Weinhofer I, et al. PLoS Genet, 2010 Oct 7. PMID 20949070, Free PMC Article
    3. Vernalization requires epigenetic silencing of FLC by histone methylation. Bastow R, et al. Nature, 2004 Jan 8. PMID 14712277
    4. The PHD-finger module of the Arabidopsis thaliana defense regulator EDM2 can recognize triply modified histone H3 peptides. Tsuchiya T, et al. Plant Signal Behav, 2014. PMID 25763495, Free PMC Article
    5. Arabidopsis Polycomb Repressive Complex 2 binding sites contain putative GAGA factor binding motifs within coding regions of genes. Deng W, et al. BMC Genomics, 2013 Aug 30. PMID 24001316, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. DNA polymerase epsilon binds histone H3.1-H4 and recruits MORC1 to mediate meiotic heterochromatin condensation.
      Title: DNA polymerase epsilon binds histone H3.1-H4 and recruits MORC1 to mediate meiotic heterochromatin condensation.
    2. Results suggest that At3g03940 and At5g18190 are involved in the phosphorylation of histone H3 at threonine 3 (H3T3) in pericentromeric/knob regions.
      Title: Osmotic stress induces phosphorylation of histone H3 at threonine 3 in pericentromeric regions of Arabidopsis thaliana.
    3. Data indicate that H3K9 dimethylation level in mutants ros1 fpgs1 (folylpolyglutamate synthase 1) was clearly reduced.
      Title: Folate polyglutamylation is involved in chromatin silencing by maintaining global DNA methylation and histone H3K9 dimethylation in Arabidopsis.
    4. Data indicate that during the response to dehydration stress the changes in H3K4me1, H3K4me2, and H3K4me3 patterns show different dynamics and specific patterns at up-regulated, down-regulated, and unaffected genes.
      Title: Dynamic changes in genome-wide histone H3 lysine 4 methylation patterns in response to dehydration stress in Arabidopsis thaliana.
    5. Data show that transposable elements are specifically targeted by H3K27me3 in the endosperm.
      Title: H3K27me3 profiling of the endosperm implies exclusion of polycomb group protein targeting by DNA methylation.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_100790.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Histone superfamily protein
    NP_563838.1
    • Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast, nucleosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10400.1); Has 14599 Blast hits to 14591 proteins in 7243 species: Archae - 0; Bacteria - 0; Metazoa - 10602; Fungi - 2038; Plants - 1256; Viruses - 0; Other Eukaryotes - 703 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2971571..2972334 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100790.3 → NP_563838.1  Histone superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563838.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P59226
      UniProtKB/TrEMBL
      A0A178WG20, A0A384L1I5, A0A5S9TDX4, Q0WRA9
      Conserved Domains (1) summary
      PTZ00018
      Location:1 → 136
      PTZ00018; histone H3; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P59226.2

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