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    coiled-coil 90B-like protein (DUF1640) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816144, updated on 18-Sep-2024

    Summary

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    Official Full Name
    coiled-coil 90B-like protein (DUF1640)
    Primary source
    TAIR:AT2G16460
    Locus tag
    AT2G16460
    See related
    Araport:AT2G16460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16F14.4; F16F14_4
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (7133387..7135812, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Minichromosome maintenance (MCM2/3/5) family protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene GW repeat- and PHD finger-containing protein NERD Neighboring gene XH domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteomic identification of divalent metal cation binding proteins in plant mitochondria. Herald VL, et al. FEBS Lett, 2003 Feb 27. PMID 12606038
    2. The hydrophobic proteome of mitochondrial membranes from Arabidopsis cell suspensions. Brugière S, et al. Phytochemistry, 2004 Jun. PMID 15276431
    3. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    4. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    5. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_127199.4
    NM_201744.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables metal ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    coiled-coil 90B-like protein (DUF1640)
    NP_565388.1
    • Protein of unknown function (DUF1640); FUNCTIONS IN: metal ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1640 (InterPro:IPR012439); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1640) (TAIR:AT3G51090.1); Has 484 Blast hits to 482 proteins in 154 species: Archae - 0; Bacteria - 7; Metazoa - 175; Fungi - 188; Plants - 83; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
    NP_973473.1
    • Protein of unknown function (DUF1640); FUNCTIONS IN: metal ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1640 (InterPro:IPR012439); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1640) (TAIR:AT3G51090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7133387..7135812 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127199.4 → NP_565388.1  coiled-coil 90B-like protein (DUF1640) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565388.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VYD8, Q8VYZ9, Q9SIV6
      Conserved Domains (1) summary
      pfam07798
      Location:55 → 228
      DUF1640; Protein of unknown function (DUF1640)

    2. NM_201744.1 → NP_973473.1  coiled-coil 90B-like protein (DUF1640) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973473.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IKD6
      Conserved Domains (1) summary
      pfam07798
      Location:55 → 169
      DUF1640; Protein of unknown function (DUF1640)
    Nucleotide Protein
    Heading Accession and Version

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