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    Nucleolar histone methyltransferase-related protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818590, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Nucleolar histone methyltransferase-related protein
    Primary source
    TAIR:AT2G40020
    Locus tag
    AT2G40020
    See related
    Araport:AT2G40020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T28M21.18; T28M21_18
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (16710929..16713339)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Ribosomal protein L10 family protein Neighboring gene nuclear RNA polymerase D1B Neighboring gene Cysteine/Histidine-rich C1 domain family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084558.3
    NM_001336817.1
    NM_129560.4
    NM_201914.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Nucleolar histone methyltransferase-related protein
    NP_001078027.1
    • Nucleolar histone methyltransferase-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WIYLD domain (InterPro:IPR018848); BEST Arabidopsis thaliana protein match is: Nucleolar histone methyltransferase-related protein (TAIR:AT1G45248.4); Has 5162 Blast hits to 3107 proteins in 297 species: Archae - 25; Bacteria - 262; Metazoa - 1913; Fungi - 476; Plants - 190; Viruses - 172; Other Eukaryotes - 2124 (source: NCBI BLink).
    NP_565920.2
    • Nucleolar histone methyltransferase-related protein; CONTAINS InterPro DOMAIN/s: WIYLD domain (InterPro:IPR018848); BEST Arabidopsis thaliana protein match is: Nucleolar histone methyltransferase-related protein (TAIR:AT1G45248.4); Has 5171 Blast hits to 3094 proteins in 302 species: Archae - 25; Bacteria - 259; Metazoa - 1900; Fungi - 494; Plants - 187; Viruses - 172; Other Eukaryotes - 2134 (source: NCBI BLink).
    NP_973643.1
    • Nucleolar histone methyltransferase-related protein; CONTAINS InterPro DOMAIN/s: WIYLD domain (InterPro:IPR018848); BEST Arabidopsis thaliana protein match is: Nucleolar histone methyltransferase-related protein (TAIR:AT1G45248.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16710929..16713339
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_201914.3 → NP_973643.1  Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973643.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IG36
      Conserved Domains (1) summary
      pfam10440
      Location:12 → 68
      WIYLD; Ubiquitin-binding WIYLD domain

    2. NM_001084558.3 → NP_001078027.1  Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078027.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W017, A0A654F1R5, A8MQW8
      Conserved Domains (1) summary
      pfam10440
      Location:11 → 68
      WIYLD; Ubiquitin-binding WIYLD domain

    3. NM_129560.4 → NP_565920.2  Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565920.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W017, Q8GW87
      Conserved Domains (1) summary
      pfam10440
      Location:1 → 56
      WIYLD; Ubiquitin-binding WIYLD domain

    4. NM_001336817.1 → NP_001325004.1  Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W017, A0A1P8B1X0
    Nucleotide Protein
    Heading Accession and Version

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