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    Fasciclin-like arabinogalactan family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832716, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Fasciclin-like arabinogalactan family protein
    Primary source
    TAIR:AT5G26730
    Locus tag
    AT5G26730
    See related
    Araport:AT5G26730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (9300416..9302158)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene organic solute transporter ostalpha protein (DUF300) Neighboring gene uncharacterized protein Neighboring gene ubiquitin carboxyl-terminal hydrolase-like protein Neighboring gene Glutamyl/glutaminyl-tRNA synthetase, class Ic Neighboring gene RmlC-like cupins superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_180541.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Fasciclin-like arabinogalactan family protein
    NP_850872.1
    • Fasciclin-like arabinogalactan family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: Fasciclin-like arabinogalactan family protein (TAIR:AT5G16920.1); Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      9300416..9302158
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180541.3 → NP_850872.1  Fasciclin-like arabinogalactan family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850872.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y7I3, A0A654G4L9, F4K185
      Conserved Domains (1) summary
      smart00554
      Location:152 → 244
      FAS1; Four repeated domains in the Fasciclin I family of proteins, present in many other contexts
    Nucleotide Protein
    Heading Accession and Version

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