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    endoribonuclease [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819604, updated on 18-Sep-2024

    Summary

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    Official Full Name
    endoribonuclease
    Primary source
    TAIR:AT3G04480
    Locus tag
    AT3G04480
    See related
    Araport:AT3G04480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T27C4.13; T27C4_13
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    12
    Sequence:
    Chromosome: 3; NC_003074.8 (1193540..1197421, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Homeodomain-like superfamily protein Neighboring gene peroxin-12 Neighboring gene Ankyrin repeat family protein Neighboring gene ncRNA Neighboring gene exportin-4 protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_111319.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables diphthine-ammonia ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    endoribonuclease
    NP_187098.2
    • endoribonucleases; FUNCTIONS IN: endoribonuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF71, ATP-binding domain (InterPro:IPR002761), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Endoribonuclease L-PSP (InterPro:IPR006175), Endoribonuclease L-PSP/chorismate mutase-like (InterPro:IPR013813); Has 2752 Blast hits to 2664 proteins in 980 species: Archae - 283; Bacteria - 1591; Metazoa - 282; Fungi - 177; Plants - 40; Viruses - 0; Other Eukaryotes - 379 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1193540..1197421 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111319.4 → NP_187098.2  endoribonuclease [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187098.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V8Z9, A0A384KE77, A0A5S9X9E4, F4J3Q1
      Conserved Domains (3) summary
      cd06155
      Location:297 → 392
      eu_AANH_C_1; A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these ...
      cd06156
      Location:431 → 551
      eu_AANH_C_2; A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the second of these ...
      cd01994
      Location:2 → 214
      Alpha_ANH_like_IV; This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily ...
    Nucleotide Protein
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