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    Cell differentiation, Rcd1-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831138, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cell differentiation, Rcd1-like protein
    Primary source
    TAIR:AT5G12980
    Locus tag
    AT5G12980
    See related
    Araport:AT5G12980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T24H18.150; T24H18_150
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (4105383..4108232, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene proline-tRNA ligase (DUF1680) Neighboring gene proline-tRNA ligase (DUF1680) Neighboring gene Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein Neighboring gene CLAVATA3/ESR-RELATED 40 Neighboring gene glucan synthase-like 12

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Uncovering a novel function of the CCR4-NOT complex in phytochrome A-mediated light signalling in plants. Schwenk P, et al. Elife, 2021 Mar 30. PMID 33783355, Free PMC Article
    2. Identification of Arabidopsis CCR4-NOT Complexes with Pumilio RNA-Binding Proteins, APUM5 and APUM2. Arae T, et al. Plant Cell Physiol, 2019 Sep 1. PMID 31093672
    3. Telomerase Interaction Partners-Insight from Plants. Fulnečková J, et al. Int J Mol Sci, 2021 Dec 29. PMID 35008793, Free PMC Article
    4. Tandem affinity purification of AtTERT reveals putative interaction partners of plant telomerase in vivo. Majerská J, et al. Protoplasma, 2017 Jul. PMID 27853871
    5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_121301.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of CCR4-NOT complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cell differentiation, Rcd1-like protein
    NP_196802.1
    • Cell differentiation, Rcd1-like protein; CONTAINS InterPro DOMAIN/s: Cell differentiation, Rcd1-like (InterPro:IPR007216); BEST Arabidopsis thaliana protein match is: Cell differentiation, Rcd1-like protein (TAIR:AT3G20800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4105383..4108232 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121301.5 → NP_196802.1  Cell differentiation, Rcd1-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196802.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UJH3, Q0WN13, Q9LXU1
      Conserved Domains (1) summary
      pfam04078
      Location:37 → 295
      Rcd1; Cell differentiation family, Rcd1-like
    Nucleotide Protein
    Heading Accession and Version

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