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    BMS1P2 BMS1 pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 642826, updated on 10-Dec-2024

    Summary

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    Official Symbol
    BMS1P2provided by HGNC
    Official Full Name
    BMS1 pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:23650
    See related
    AllianceGenome:HGNC:23650
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    BMS1P6; BMS1LP2; BMS1LP6; bA144G6.1
    Expression
    Ubiquitous expression in duodenum (RPKM 2.8), skin (RPKM 2.6) and 25 other tissues See more
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    Genomic context

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    See BMS1P2 in Genome Data Viewer
    Location:
    10q11.22
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (47535574..47553523, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (48426878..48444822, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (48185839..48203788)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene BMS1P2-AGAP9 readthrough Neighboring gene annexin A8 Neighboring gene uncharacterized LOC124902421 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3327 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3328 Neighboring gene RNA, 5S ribosomal pseudogene 312 Neighboring gene glutamate dehydrogenase 1 pseudogene 6 Neighboring gene dual specificity phosphatase 8 pseudogene 1 Neighboring gene cathepsin L pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Human paralogs of KIAA0187 were created through independent pericentromeric-directed and chromosome-specific duplication mechanisms. Crosier M, et al. Genome Res, 2002 Jan. PMID 11779832, Free PMC Article
    2. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776
    3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. Brandenberger R, et al. Nat Biotechnol, 2004 Jun. PMID 15146197
    4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • BMS1 homolog, ribosome assembly protein pseudogene
    • BMS1, ribosome biogenesis factor pseudogene 2
    • BMS1, ribosome biogenesis factor pseudogene 6
    • BMS1-like, ribosome assembly protein pseudogene
    • BMS1L pseudogene 2
    • BMS1L pseudogene 6

    Clone Names

    • FLJ99065, KIAA0187

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024495.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL591684, BC051298, DB072344

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      47535574..47553523 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      48426878..48444822 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_006110.5: Suppressed sequence

      Description
      NG_006110.5: This RefSeq was permanently suppressed because there is sufficient evidence that this locus is transcribed.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials