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    LINC01069 long intergenic non-protein coding RNA 1069 [ Homo sapiens (human) ]

    Gene ID: 101927176, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01069provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1069provided by HGNC
    Primary source
    HGNC:HGNC:49109
    See related
    AllianceGenome:HGNC:49109
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01069 in Genome Data Viewer
    Location:
    13q22.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (77979766..77994773, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (77204698..77219706, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (78553901..78568908, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene VISTA enhancer hs1394 Neighboring gene EDNRB antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:78425667-78426299 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:78427507-78428016 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:78428017-78428526 Neighboring gene EDNRB proximal promoter region Neighboring gene endothelin receptor type B Neighboring gene EDNRB upstream promoter region Neighboring gene RNA, 7SL, cytoplasmic 810, pseudogene Neighboring gene long intergenic non-protein coding RNA 446 Neighboring gene OBI1 antisense RNA 1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:78675991-78677190 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7847 Neighboring gene serglycin pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_108076.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK090854, AL139002

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      77979766..77994773 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      77204698..77219706 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)