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    BC107364 cDNA sequence BC107364 [ Mus musculus (house mouse) ]

    Gene ID: 329716, updated on 27-Nov-2024

    Summary

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    Official Symbol
    BC107364provided by MGI
    Official Full Name
    cDNA sequence BC107364provided by MGI
    Primary source
    MGI:MGI:3618860
    See related
    Ensembl:ENSMUSG00000046317 AllianceGenome:MGI:3618860
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D730018G16
    Expression
    Biased expression in testis adult (RPKM 2.9), colon adult (RPKM 0.8) and 6 other tissues See more
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    Genomic context

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    See BC107364 in Genome Data Viewer
    Location:
    3 F2.1; 3 41.84 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (96341104..96361676, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (96433788..96454361, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene nuclear encoded tRNA glycine 6 (anticodon CCC) Neighboring gene nuclear encoded tRNA lysine 15 (anticodon CTT) Neighboring gene nuclear encoded tRNA histidine 2 (anticodon GTG) Neighboring gene STARR-seq mESC enhancer starr_08430 Neighboring gene predicted gene, 26232 Neighboring gene nuclear encoded tRNA asparagine 11 (anticodon GTT) Neighboring gene predicted gene, 57479 Neighboring gene nuclear encoded tRNA histidine 7 (anticodon GTG) Neighboring gene CCR4-NOT transcription complex, subunit 3 pseudogene Neighboring gene predicted gene 10685 Neighboring gene nuclear encoded tRNA histidine 9 (anticodon GTG)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. KCTD13-mediated ubiquitination and degradation of GluN1 regulates excitatory synaptic transmission and seizure susceptibility. Gu J, et al. Cell Death Differ, 2023 Jul. PMID 37142655, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Clone Names

    • MGC130342, MGC130343

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC329716

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001256180.1 → NP_001243109.1  uncharacterized protein LOC329716 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC121792
      Consensus CDS
      CCDS57245.1
      UniProtKB/TrEMBL
      Q3KNB5
      Related
      ENSMUST00000093126.11

    2. NM_001256181.1 → NP_001243110.1  uncharacterized protein LOC329716 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an exon in the 3' coding region, which results in a frameshift, compared to variant 1. The encoded isoform (2) is shorter and has a distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AC121792
      Consensus CDS
      CCDS57244.1
      UniProtKB/TrEMBL
      Q3KNB6
      Related
      ENSMUST00000098841.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      96341104..96361676 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030252654.2 → XP_030108514.1  uncharacterized protein LOC329716 isoform X1

    RNA

    1. XR_003954335.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_183223.1: Suppressed sequence

      Description
      NM_183223.1: This RefSeq was permanently suppressed because no support for the protein exists and it is nonsense-mediated mRNA decay (NMD) candidate.
    Nucleotide Protein Strain
    Heading Accession and Version

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