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    5730455P16Rik RIKEN cDNA 5730455P16 gene [ Mus musculus (house mouse) ]

    Gene ID: 70591, updated on 9-Dec-2024

    Summary

    Official Symbol
    5730455P16Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 5730455P16 geneprovided by MGI
    Primary source
    MGI:MGI:1917841
    See related
    Ensembl:ENSMUSG00000057181 AllianceGenome:MGI:1917841
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be involved in intracellular protein transport and vesicle tethering to Golgi. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and cytosol. Predicted to be active in trans-Golgi network. Orthologous to human C17orf75 (chromosome 17 open reading frame 75). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in cerebellum adult (RPKM 7.3), frontal lobe adult (RPKM 6.4) and 25 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See 5730455P16Rik in Genome Data Viewer
    Location:
    11 B5; 11 47.8 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (80251318..80268860, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (80360492..80378048, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene ras homolog family member T1 Neighboring gene STARR-seq mESC enhancer starr_30145 Neighboring gene STARR-positive B cell enhancer mm9_chr11:80116169-80116470 Neighboring gene rhomboid like 3 Neighboring gene STARR-positive B cell enhancer ABC_E7026 Neighboring gene STARR-seq mESC enhancer starr_30146 Neighboring gene zinc finger protein 207 Neighboring gene STARR-seq mESC enhancer starr_30149 Neighboring gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 11

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in intracellular protein transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in vesicle tethering to Golgi IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in vesicle tethering to Golgi IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in vesicle tethering to Golgi ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasmic vesicle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
     
    located_in trans-Golgi network ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027472.3NP_081748.1  protein Njmu-R1

      See identical proteins and their annotated locations for NP_081748.1

      Status: VALIDATED

      Source sequence(s)
      AK078548, AK153246, AL591146
      Consensus CDS
      CCDS25132.1
      UniProtKB/Swiss-Prot
      Q7TMQ9, Q9CYI0
      UniProtKB/TrEMBL
      A0PJK9
      Related
      ENSMUSP00000099515.5, ENSMUST00000103225.11
      Conserved Domains (1) summary
      pfam15053
      Location:46390
      Njmu-R1; Mjmu-R1-like protein family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      80251318..80268860 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006534198.4XP_006534261.1  protein Njmu-R1 isoform X1

      See identical proteins and their annotated locations for XP_006534261.1

      UniProtKB/TrEMBL
      Q3TUY5
      Conserved Domains (1) summary
      pfam15053
      Location:1249
      Njmu-R1; Mjmu-R1-like protein family