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    Cbln1os cerebellin 1 precursor protein opposite strand [ Mus musculus (house mouse) ]

    Gene ID: 100040294, updated on 2-Nov-2024

    Summary

    Official Symbol
    Cbln1osprovided by MGI
    Official Full Name
    cerebellin 1 precursor protein opposite strandprovided by MGI
    Primary source
    MGI:MGI:3780864
    See related
    Ensembl:ENSMUSG00000098295 AllianceGenome:MGI:3780864
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm2694; Synage; linc1582; lncRNA-PM; C230036H16Rik
    Summary
    Is expressed in central nervous system and vibrissa. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in cerebellum adult (RPKM 36.7), testis adult (RPKM 8.2) and 4 other tissues See more
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    Genomic context

    See Cbln1os in Genome Data Viewer
    Location:
    8 C3; 8 42.16 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (88199440..88252182)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (87472812..87525554)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_22201 Neighboring gene predicted gene, 19872 Neighboring gene cerebellin 1 precursor protein Neighboring gene STARR-seq mESC enhancer starr_22203 Neighboring gene STARR-seq mESC enhancer starr_22205 Neighboring gene RIKEN cDNA 4933402J07 gene Neighboring gene STARR-seq mESC enhancer starr_22207 Neighboring gene STARR-seq mESC enhancer starr_22208 Neighboring gene RIKEN cDNA 1700096P03 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033430.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AK137304
      Related
      ENSMUST00000181159.10
    2. NR_125722.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate 5'-terminal exon and an alternate splice site in the 3'-terminal exon, compared to variant 1.
      Source sequence(s)
      BU962796, BY258569, CD776551
      Related
      ENSMUST00000182758.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      88199440..88252182
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)