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    LINC00942 long intergenic non-protein coding RNA 942 [ Homo sapiens (human) ]

    Gene ID: 100292680, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC00942provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 942provided by HGNC
    Primary source
    HGNC:HGNC:48636
    See related
    Ensembl:ENSG00000249628 AllianceGenome:HGNC:48636
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC00942 in Genome Data Viewer
    Location:
    12p13.33
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (1500491..1504424)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (1494753..1498714)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (1609657..1613590)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene ELKS/RAB6-interacting/CAST family member 1 Neighboring gene uncharacterized LOC107987182 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5796 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:1551257-1551756 Neighboring gene uncharacterized LOC124902856 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:1554896-1555397 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5797 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:1597926-1599125 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:1608954-1610153 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:1611914-1612112 Neighboring gene uncharacterized LOC107984507 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4112 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4113 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5798 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5799 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5800 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5801 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5802 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5803 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:1697008-1697667 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:1701701-1702304 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5804 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4115 Neighboring gene F-box and leucine rich repeat protein 14

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028415.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC004671, AK090616, BG332174, BQ942184, BQ949914, BQ954540
      Related
      ENST00000515614.4

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      1500491..1504424
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      1494753..1498714
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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