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    C1orf220 chromosome 1 putative open reading frame 220 [ Homo sapiens (human) ]

    Gene ID: 400798, updated on 10-Dec-2024

    Summary

    Official Symbol
    C1orf220provided by HGNC
    Official Full Name
    chromosome 1 putative open reading frame 220provided by HGNC
    Primary source
    HGNC:HGNC:33805
    See related
    Ensembl:ENSG00000213057 AllianceGenome:HGNC:33805
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in lymph node (RPKM 1.7), spleen (RPKM 1.5) and 21 other tissues See more
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    Genomic context

    See C1orf220 in Genome Data Viewer
    Location:
    1q25.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (178542796..178548889)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (177897519..177903612)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (178511931..178518024)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371631 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:178505524-178506723 Neighboring gene uncharacterized LOC124904460 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2142 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1577 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1578 Neighboring gene uncharacterized LOC105371632 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2143 Neighboring gene RNA, 5S ribosomal pseudogene 69 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2144 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2145 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2146 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2147 Neighboring gene Sharpr-MPRA regulatory region 1317 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:178621695-178622894 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2148 Neighboring gene microRNA 4424

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Phenotypes

    BioGRID CRISPR Screen Phenotypes (1 hit/107 screens)

    EBI GWAS Catalog

    Description
    Discovery and refinement of loci associated with lipid levels.
    EBI GWAS Catalog

    Interactions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033186.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK092849, AL513013, BC136727
      Related
      ENST00000521244.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      178542796..178548889
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      177897519..177903612
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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