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    LINC00582 long intergenic non-protein coding RNA 582 [ Homo sapiens (human) ]

    Gene ID: 100287814, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC00582provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 582provided by HGNC
    Primary source
    HGNC:HGNC:43842
    See related
    AllianceGenome:HGNC:43842
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SMILO
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC00582 in Genome Data Viewer
    Location:
    1q42.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (231591292..231612090, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (230974505..230995290, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (231727038..231747836, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 8140 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:231663972-231665171 Neighboring gene TSNAX-DISC1 readthrough (NMD candidate) Neighboring gene TSNAX divergent transcript Neighboring gene translin associated factor X Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2731 Neighboring gene MPRA-validated peak764 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1954 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1955 Neighboring gene MPRA-validated peak765 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:231787054-231787554 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:231787555-231788055 Neighboring gene DISC1 scaffold protein Neighboring gene ReSE screen-validated silencer GRCh37_chr1:231830220-231830402 Neighboring gene RNA, U5A small nuclear 5, pseudogene Neighboring gene MPRA-validated peak767 silencer Neighboring gene uncharacterized LOC105373170 Neighboring gene disrupted in schizophrenia 2

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Other Names

    • specific myeloma intergenic long non-coding RNA

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_034037.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI820788, AL626763, AW207115, BX092370

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      231591292..231612090 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      230974505..230995290 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)