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    DNAJB8-AS1 DNAJB8 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 285224, updated on 10-Dec-2024

    Summary

    Official Symbol
    DNAJB8-AS1provided by HGNC
    Official Full Name
    DNAJB8 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:41029
    See related
    Ensembl:ENSG00000242049 AllianceGenome:HGNC:41029
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 14.3) See more
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    Genomic context

    See DNAJB8-AS1 in Genome Data Viewer
    Location:
    3q21.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (128463594..128472317)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (131205193..131213882)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (128182437..128191160)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128150709-128151289 Neighboring gene uncharacterized LOC124909428 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128151290-128151869 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128151870-128152450 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128154435-128155122 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20482 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20483 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128170962-128171462 Neighboring gene uncharacterized LOC124909429 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128177612-128178132 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128178133-128178652 Neighboring gene DnaJ heat shock protein family (Hsp40) member B8 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128202328-128202892 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128202893-128203457 Neighboring gene GATA binding protein 2 Neighboring gene CRISPRi-FlowFISH-validated H1-10 regulatory element 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128208361-128209172 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128209173-128209982 Neighboring gene GATA2 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14707 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:128223035-128224234 Neighboring gene uncharacterized LOC90246

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    General gene information

    Markers

    Other Names

    • DNAJB8 antisense RNA 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037890.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC080005
      Related
      ENST00000471626.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      128463594..128472317
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      131205193..131213882
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)