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    Ska2l1 spindle and kinetochore associated complex subunit 2 like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102555739, updated on 27-Dec-2024

    Summary

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    Official Symbol
    Ska2l1provided by RGD
    Official Full Name
    spindle and kinetochore associated complex subunit 2 like 1provided by RGD
    Primary source
    RGD:7704573
    See related
    EnsemblRapid:ENSRNOG00000020446 AllianceGenome:RGD:7704573
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    AABR07005838.1
    Summary
    Predicted to enable microtubule binding activity. Predicted to be involved in chromosome segregation and mitotic cell cycle. Predicted to be located in cytoplasm. Predicted to be part of outer kinetochore. Predicted to be active in spindle microtubule. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 34.8) and Thymus (RPKM 7.5) See more
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    Genomic context

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    See Ska2l1 in Genome Data Viewer
    Location:
    1q37
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (193657022..193730465)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (184226732..184300750)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (202832365..202833985)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103691243 Neighboring gene WD repeat domain 11 Neighboring gene uncharacterized LOC120099941 Neighboring gene uncharacterized LOC102555965 Neighboring gene small nucleolar RNA SNORA48

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables microtubule binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell division IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in chromosome segregation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in chromosome segregation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mitotic cell cycle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of outer kinetochore IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of outer kinetochore IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in spindle microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in spindle microtubule IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    spindle and kinetochore-associated protein 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      193657022..193730465
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039101235.2 → XP_038957163.1  spindle and kinetochore-associated protein 2-like

      UniProtKB/TrEMBL
      A0A8I6G7C3
      Related
      ENSRNOP00000080953.1, ENSRNOT00000027709.4
      Conserved Domains (1) summary
      cl17165
      Location:11 → 126
      SKA2; Spindle and kinetochore-associated protein 2

    RNA

    1. XR_001836024.3 RNA Sequence

    2. XR_010063167.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Research Materials