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    Pcdhb17 protocadherin beta 17 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 548104, updated on 9-Dec-2024

    Summary

    Symbol
    Pcdhb17provided by RGD
    Full Name
    protocadherin beta 17provided by RGD
    Primary source
    RGD:1549775
    See related
    EnsemblRapid:ENSRNOG00000039470 AllianceGenome:RGD:1549775
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable calcium ion binding activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 40.7), Lung (RPKM 21.2) and 9 other tissues See more
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    Genomic context

    See Pcdhb17 in Genome Data Viewer
    Location:
    18p11
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (29470868..29475832)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (29196858..29201822)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (30565817..30570184)

    Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene protocadherin beta 16-like Neighboring gene protocadherin beta 16 Neighboring gene protocadherin beta 19 Neighboring gene small nucleolar RNA SNORA31

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    protocadherin beta-16
    Names
    protocadherin beta-18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001408905.2NP_001395834.1  protocadherin beta-16 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000018
      UniProtKB/TrEMBL
      A0A8I5ZYQ9, A6J374
      Related
      ENSRNOP00000039238.3, ENSRNOT00000040998.4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086036.1 Reference GRCr8

      Range
      29470868..29475832
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001014805.1: Suppressed sequence

      Description
      NM_001014805.1: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.