U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ANXA2R-AS1 ANXA2R antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 153684, updated on 10-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ANXA2R-AS1provided by HGNC
    Official Full Name
    ANXA2R antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:27208
    See related
    Ensembl:ENSG00000215068 AllianceGenome:HGNC:27208
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in prostate (RPKM 2.3), spleen (RPKM 2.3) and 23 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ANXA2R-AS1 in Genome Data Viewer
    Location:
    5p12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (43042134..43045268)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (43294995..43298174)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (43042236..43045370)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC643977 Neighboring gene uncharacterized LOC105374746 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22517 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22518 Neighboring gene Sharpr-MPRA regulatory region 2050 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43000051-43000552 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43000553-43001052 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:43007431-43008283 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43010287-43010787 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22520 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22521 Neighboring gene ANXA2R overlapping transcript 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43018214-43018736 Neighboring gene uncharacterized LOC105374748 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22523 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43033815-43034354 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43034355-43034892 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:43039303-43039843 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22526 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15989 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22527 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22528 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43042769-43043306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43043307-43043842 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43044419-43044918 Neighboring gene annexin A2 receptor Neighboring gene Sharpr-MPRA regulatory region 2707 Neighboring gene uncharacterized LOC100132356 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22532 Neighboring gene uncharacterized LOC100506639 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:43073915-43074416 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:43074417-43074916 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43078210-43078763 Neighboring gene uncharacterized LOC124900972

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Clone Names

    • MGC120598, AC025171.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015447.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      BC101385
      Related
      ENST00000399543.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      43042134..43045268
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      43294995..43298174
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_194290.1: Suppressed sequence

      Description
      NM_194290.1: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.