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    SRD5A3-AS1 SRD5A3 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100506462, updated on 10-Dec-2024

    Summary

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    Official Symbol
    SRD5A3-AS1provided by HGNC
    Official Full Name
    SRD5A3 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:44138
    See related
    Ensembl:ENSG00000249700 AllianceGenome:HGNC:44138
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 4.9), spleen (RPKM 0.7) and 5 other tissues See more
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    Genomic context

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    See SRD5A3-AS1 in Genome Data Viewer
    Location:
    4q12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (55366601..55385580, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (58854739..58873724, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (56232768..56251747, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 34 pseudogene 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:56212130-56212890 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:56230743-56231431 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:56231432-56232119 Neighboring gene steroid 5 alpha-reductase 3 Neighboring gene FCF1 pseudogene 8 Neighboring gene long intergenic non-protein coding RNA 2928 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15438 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15439 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21574 Neighboring gene transmembrane protein 165 Neighboring gene Sharpr-MPRA regulatory region 15506 Neighboring gene clock circadian regulator Neighboring gene Sharpr-MPRA regulatory region 12160 Neighboring gene RN7SK pseudogene 30

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • SRD5A3 antisense RNA 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037969.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC069200, BC034006, BQ574699
      Related
      ENST00000510637.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      55366601..55385580 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      58854739..58873724 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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